Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0994 ATGGGTTCAAATGGAAAGGTCTATAGCTTCGATGAAGTGGCGAAGCATAATCACAGGAAGGATTGCTGGATTGTTATATCTGGGAAGGTGTACAATGTAACCTCTTTCCTAGAAGAACATCCCGGCGGCGATGAAGTCTTGCTATTAGCTGTCGAAAAAGATGCGACGGATGATTTTGAGGATGTGGGCCATAGTGAATCGGCAAAACAACTACTGGAAAATTACTATGTTGGCAAAGTCGACACTGCAACTCTTCCGGAGAAACCAAATTACCGTCCGACTCCAACTACAGAATCGGCATCGGAATCGAAGAAATCTTATGGGGTTTTGATAAAAGTCTTGCAATTGCTTCTCCCTTTGTTGATCGCGGGCCTAGCATATTCACTGCCATACTTTCGCACAAAAGTGTGA 411 44.04 MGSNGKVYSFDEVAKHNHRKDCWIVISGKVYNVTSFLEEHPGGDEVLLLAVEKDATDDFEDVGHSESAKQLLENYYVGKVDTATLPEKPNYRPTPTTESASESKKSYGVLIKVLQLLLPLLIAGLAYSLPYFRTKV 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7305465 7306387 + Conep18aG0102300.1 Cone18ag0994 457955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0994 136 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cone18ag0994 136 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cone18ag0994 136 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cone18ag0994 136 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cone18ag0994 136 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cone18ag0994 136 FunFam Cytochrome b5 type B 2 85 - -
Cone18ag0994 136 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 80 IPR001199 -
Cone18ag0994 136 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cone18ag0994 136 PANTHER CYTOCHROME B5 4 119 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cone18ag0994 136 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Cone18ag0994 136 Gene3D - 2 84 IPR036400 -
Cone18ag0994 136 SMART Cyt_b5_2 8 81 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0994 K23490 - - mdm:103424638 182.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0449 Cone-Chr14:2102538 Cone18ag0994 Cone-Chr18:7305465 7.82E-63 dispersed
Cone15ag0479 Cone-Chr15:2260879 Cone18ag0994 Cone-Chr18:7305465 8.28E-58 dispersed
Cone18ag0994 Cone-Chr18:7305465 Cone4ag0397 Cone-Chr4:1806930 5.07E-45 dispersed
Cone1ag1008 Cone-Chr1:55070293 Cone18ag0994 Cone-Chr18:7305465 5.18E-46 wgd
Cone18ag0994 Cone-Chr18:7305465 Cone5ag0716 Cone-Chr5:3082824 1.52E-29 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
Cone1ag1008 . 1 134 NADPH P450 reductases AT5G53560 73.1 1.1e-54 209.9
Cone5ag0716 . 1 168 NADPH P450 reductases AT5G53560 58.3 2.4e-49 192.2
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.1e-46 183.3
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.9e-46 182.6
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G53560 56.7 1.4e-41 166.4
Cone15ag0479 . 1 133 NADPH P450 reductases AT5G53560 52.2 1.6e-37 152.9
Cone4ag0397 . 1 133 NADPH P450 reductases AT5G48810 65.2 7.4e-49 190.7
Cone7ag0386 . 1 133 NADPH P450 reductases AT5G48810 65.2 1.3e-48 189.9
Cone1ag1008 . 1 135 NADPH P450 reductases AT5G48810 62.0 5.0e-45 177.9
Cone18ag0994 . 1 135 NADPH P450 reductases AT5G48810 55.9 6.3e-40 161.0
Cone14ag0449 . 1 133 NADPH P450 reductases AT5G48810 53.7 2.4e-39 159.1
Cone7ag0386 . 22 133 NADPH P450 reductases AT2G32720 80.4 1.6e-48 189.5
Cone4ag0397 . 22 133 NADPH P450 reductases AT2G32720 79.5 4.6e-48 188.0
Cone1ag1008 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.8e-37 152.1
Cone4ag0958 . 1 117 NADPH P450 reductases AT1G60660 60.0 4.3e-37 151.4
Cone9ag0531 . 1 130 NADPH P450 reductases AT1G26340 59.7 5.5e-41 164.5
Cone3ag0519 . 2 281 NADPH P450 reductases AT5G17770 80.4 9.1e-131 463.8
Cone10ag0494 . 3 281 NADPH P450 reductases AT5G17770 81.0 2.2e-129 459.1
Cone5ag1478 . 8 278 NADPH P450 reductases AT5G17770 76.4 8.2e-124 440.7
Cone1ag0382 . 8 278 NADPH P450 reductases AT5G17770 77.1 5.3e-123 438.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014138 1 1 0 0 1 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 0 23