Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1009 ATGGTCCAGCAACCACCATACACTGGTACTACTGAGGATGACTGGAGGTCCTCCATCACCAGCACAACAAACAACGGCACCTCAACCACCCAGCACGGCGTCAGCCACCACCCGACATACCACGGCGTCCGCAGGCGGCGTTGGGGAAAATGGGTGTCGGAAATTCGAGAACCGCGCAAAAAATCACGCATTTGGTTGGGATCATTTCCGGCCCCTGAAATGGCAGCCAAGGCCCATGACGTGGCAGCCTACTGCTTAAAAGGACGTAAGGCACAGCTCAATTTTCCAGACGAAGTCGATGATTTACCCCGACCGGCGTCGTTTGCAGCTAAGGATATTCAAGATGCAGCAGCTAAGGCCGCAGCTCAGATGATCGTGTCGGCTAGGAAGATCGACGTGTCAGACGAGGAGGTTGATTGTGGACGGAGTAATGATTTTTGGGGTGAGATTGAGTTGCCGGAACTGAGGAGTAAAGGGCAGTGTTACAGCTTTTGGAATTCGTACGGCTGGGTTTTTCCTAACTGCGACGATACGTCGTGTCAGGATCAGGATCAGGATCAGGATCAGGAAGAGACGAGGCAGAGCATGCCTATAAACAACACATCGTTTTTTATTTGA 618 52.1 MVQQPPYTGTTEDDWRSSITSTTNNGTSTTQHGVSHHPTYHGVRRRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAHDVAAYCLKGRKAQLNFPDEVDDLPRPASFAAKDIQDAAAKAAAQMIVSARKIDVSDEEVDCGRSNDFWGEIELPELRSKGQCYSFWNSYGWVFPNCDDTSCQDQDQDQDQEETRQSMPINNTSFFI 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7471657 7472474 - Conep18aG0103900.1 Cone18ag1009 457970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1009 205 Pfam AP2 domain 39 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1009 205 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1009 205 MobiDBLite consensus disorder prediction 1 36 - -
Cone18ag1009 205 CDD AP2 40 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1009 205 PRINTS Ethylene responsive element binding protein signature 78 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1009 205 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1009 205 FunFam Ethylene-responsive transcription factor 2 39 97 - -
Cone18ag1009 205 SMART rav1_2 39 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1009 205 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677(InterPro)
Cone18ag1009 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 154 IPR051032 -
Cone18ag1009 205 MobiDBLite consensus disorder prediction 179 198 - -
Cone18ag1009 205 MobiDBLite consensus disorder prediction 1 41 - -
Cone18ag1009 205 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1009 Cone-Chr18:7471657 Cone20ag0599 Cone-Chr20:3503235 1.07E-37 dispersed
Cone11ag0497 Cone-Chr11:2554738 Cone18ag1009 Cone-Chr18:7471657 1.58E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45210 PF07714 PK_Tyr_Ser-Thr 1.10E-44 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1009 K09286 - mdm:103417636 192.2