Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag1009 | ATGGTCCAGCAACCACCATACACTGGTACTACTGAGGATGACTGGAGGTCCTCCATCACCAGCACAACAAACAACGGCACCTCAACCACCCAGCACGGCGTCAGCCACCACCCGACATACCACGGCGTCCGCAGGCGGCGTTGGGGAAAATGGGTGTCGGAAATTCGAGAACCGCGCAAAAAATCACGCATTTGGTTGGGATCATTTCCGGCCCCTGAAATGGCAGCCAAGGCCCATGACGTGGCAGCCTACTGCTTAAAAGGACGTAAGGCACAGCTCAATTTTCCAGACGAAGTCGATGATTTACCCCGACCGGCGTCGTTTGCAGCTAAGGATATTCAAGATGCAGCAGCTAAGGCCGCAGCTCAGATGATCGTGTCGGCTAGGAAGATCGACGTGTCAGACGAGGAGGTTGATTGTGGACGGAGTAATGATTTTTGGGGTGAGATTGAGTTGCCGGAACTGAGGAGTAAAGGGCAGTGTTACAGCTTTTGGAATTCGTACGGCTGGGTTTTTCCTAACTGCGACGATACGTCGTGTCAGGATCAGGATCAGGATCAGGATCAGGAAGAGACGAGGCAGAGCATGCCTATAAACAACACATCGTTTTTTATTTGA | 618 | 52.1 | MVQQPPYTGTTEDDWRSSITSTTNNGTSTTQHGVSHHPTYHGVRRRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAHDVAAYCLKGRKAQLNFPDEVDDLPRPASFAAKDIQDAAAKAAAQMIVSARKIDVSDEEVDCGRSNDFWGEIELPELRSKGQCYSFWNSYGWVFPNCDDTSCQDQDQDQDQEETRQSMPINNTSFFI | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7471657 | 7472474 | - | Conep18aG0103900.1 | Cone18ag1009 | 457970 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag1009 | 205 | Pfam | AP2 domain | 39 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag1009 | 205 | Gene3D | AP2/ERF domain | 39 | 97 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag1009 | 205 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cone18ag1009 | 205 | CDD | AP2 | 40 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag1009 | 205 | PRINTS | Ethylene responsive element binding protein signature | 78 | 98 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag1009 | 205 | PRINTS | Ethylene responsive element binding protein signature | 40 | 51 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag1009 | 205 | FunFam | Ethylene-responsive transcription factor 2 | 39 | 97 | - | - | |
Cone18ag1009 | 205 | SMART | rav1_2 | 39 | 102 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone18ag1009 | 205 | SUPERFAMILY | DNA-binding domain | 39 | 98 | IPR016177 | GO:0003677(InterPro) | |
Cone18ag1009 | 205 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 27 | 154 | IPR051032 | - | |
Cone18ag1009 | 205 | MobiDBLite | consensus disorder prediction | 179 | 198 | - | - | |
Cone18ag1009 | 205 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cone18ag1009 | 205 | ProSiteProfiles | AP2/ERF domain profile. | 39 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone18ag1009 | Cone-Chr18:7471657 | Cone20ag0599 | Cone-Chr20:3503235 | 1.07E-37 | dispersed | |
Cone11ag0497 | Cone-Chr11:2554738 | Cone18ag1009 | Cone-Chr18:7471657 | 1.58E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45210 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-44 | CL0016 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag1009 | K09286 | - | mdm:103417636 | 192.2 |