Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1010 ATGAAAGTGGAGTTAGGTTTGGCCGGAGGGGAGTGGAACGATGAGGATAAGACTATGCTTTCTGCAGTTCTAGGCACTAAAGCTTTCGATTACTTGCTTTCGAGCTGTGTCTCGAACGAGAATATGTTAATGGCAGTAGGCAGTGACGATAATCTTCAAGACAAGCTTTCCGATCTAGTAGACCGACCTAACTCATCGAATTTCAACTGGAACTACTCCATTTTCTGGCAGATTTCTCGCTCCAAATCCGGTGATTTCATTCTAGGCTGGGGAGATGGATCCTGTAGAGAGCCTGGAGCTGGAGAAGAATCGGAAACTAATCGATTTCTCAATTTCCGGCTTGAAGATGAGAATCGACAGAGGTTGAGGAAAAGAGCTCTTCAGAAACTTCATACATTCTTTGGGGGCTCAGATGAGGATAATTATGCTCTAGGGTTAGATAGAGTTACTGATACAGAAATGTTCTTCCTTGCTTCTATGTGTTTCTCTTTCGCTAGAGGGGAAGGTGGGCCGGGAAAATGCTTATTGTCCGGAAAACACTTTTGGTTTACAGATTTGCTCAAATCGCCAGGTGATTATTGTGTGAGGTCATTTCTTGCTAAATCTGCTGGAATTCAGACTGTTGTTTTAGTACCCACTGATATTGGTGTAGTTGAATTAGGTTCAGTTAGATCCGTTTCTGAAAGCTTAGAATTGGTTCAATCGATTAGATCTTTATTTTCGTCAAATTCATCATCACTTGATCGAACAAAGCTGTTTACTAGCTTGCCTTTAGTGAGCGAAAAGAAAGATGACAATTACCATTTTCCCGGATTGGTGGGTGGGGAGAGAGGAGGGGATGGGATGATTCTTCCAAAGATTTTCGGGCAGGATTTGAATTCGGGCAATTTGGTCAGGTCCAATTTCCGGGAGAAGCTTGCTGTTAGGAAAATGGAAGATAGGTCATGGGAAGGCTATGCAAATGGAGGAGGTAGAGGGGTTTCTCCTTTTCTGAGCCCACAAAATGGGCTTCATGGGTCGGGTTGGGTAGCCCATCATCATGTTCATGGTCTGAAACAGGGTAATGTAACACAAGAGCTAGTGAATGGAAACAATAATAACAATAATGTTAGGGAAGAATTTTGGCTCAATCATTACCCACCTCAAAAGCAACAAACTCAAATGCAAATCGATTTTTCAGGATCAAATTCTAGACCGCCCATGATTACAAGGGTAGTAAATGCAGAATCTGAGCATTCTGATATTGAAGCTTCATGCAAGGAAGAGATGTCCGGTCCGGTAAATGAAAGAAGGCCTAGAAAACGTGGAAGAAAACCGGCAAATGGGAGGGAGGAGCCGCTTAATCATGTTGAAGCAGAGAGACAAAGACGAGAGAAATTGAACCAGAGATTCTATGCTTTAAGAGCGGTTGTGCCCAATATTTCCAAAATGGACAAAGCTTCATTGTTAGGAGATGCAATTTCTTACATCAATGAGCTGCAAGAAAAGCTAAGGGTCATGGAAGAACAACAGAGGGGGGATGGTAATTCAGGGAGCAGCTCAAAAGACATGATGGCATCAGTACCTGAAGTTGATGTTCAAGCCGTACGTGATGAAGTTATTGTTAGGCTAAGTTGTCCTCTCAATTCACACCCGGTTTCAAAACTGATTAGGGCGTTTAAAGAGGCGAAAGTAAGTGTTGTAGAATCTAAACTAAGTACAGGAAATGATACTGTGTTTCATACTTTTGTTGTTAAGTCTCATCATGGGTCTGAGCAACTAACAAAGGAAAAGTTGATCACAACATTCTCTGGGGAATCAAGCTCGTTGCAGCTGCTGTAA 1821 42.39 MKVELGLAGGEWNDEDKTMLSAVLGTKAFDYLLSSCVSNENMLMAVGSDDNLQDKLSDLVDRPNSSNFNWNYSIFWQISRSKSGDFILGWGDGSCREPGAGEESETNRFLNFRLEDENRQRLRKRALQKLHTFFGGSDEDNYALGLDRVTDTEMFFLASMCFSFARGEGGPGKCLLSGKHFWFTDLLKSPGDYCVRSFLAKSAGIQTVVLVPTDIGVVELGSVRSVSESLELVQSIRSLFSSNSSSLDRTKLFTSLPLVSEKKDDNYHFPGLVGGERGGDGMILPKIFGQDLNSGNLVRSNFREKLAVRKMEDRSWEGYANGGGRGVSPFLSPQNGLHGSGWVAHHHVHGLKQGNVTQELVNGNNNNNNVREEFWLNHYPPQKQQTQMQIDFSGSNSRPPMITRVVNAESEHSDIEASCKEEMSGPVNERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYINELQEKLRVMEEQQRGDGNSGSSSKDMMASVPEVDVQAVRDEVIVRLSCPLNSHPVSKLIRAFKEAKVSVVESKLSTGNDTVFHTFVVKSHHGSEQLTKEKLITTFSGESSSLQLL 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7488601 7490792 + Conep18aG0104000.1 Cone18ag1010 457971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1010 606 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 444 493 IPR011598 GO:0046983(InterPro)
Cone18ag1010 606 MobiDBLite consensus disorder prediction 438 455 - -
Cone18ag1010 606 SMART finulus 450 499 IPR011598 GO:0046983(InterPro)
Cone18ag1010 606 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Cone18ag1010 606 PANTHER MYC 42 597 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Cone18ag1010 606 MobiDBLite consensus disorder prediction 411 430 - -
Cone18ag1010 606 Coils Coil 483 503 - -
Cone18ag1010 606 Pfam Helix-loop-helix DNA-binding domain 448 494 IPR011598 GO:0046983(InterPro)
Cone18ag1010 606 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 447 504 IPR036638 GO:0046983(InterPro)
Cone18ag1010 606 FunFam Transcription factor bHLH13 437 509 - -
Cone18ag1010 606 CDD bHLH_AtAIB_like 441 516 - -
Cone18ag1010 606 Gene3D - 438 506 IPR036638 GO:0046983(InterPro)
Cone18ag1010 606 MobiDBLite consensus disorder prediction 411 455 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1010 Cone-Chr18:7488601 Cone8ag0471 Cone-Chr8:3119283 3.74E-59 dispersed
Cone11ag0496 Cone-Chr11:2544288 Cone18ag1010 Cone-Chr18:7488601 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45211 PF07714 PK_Tyr_Ser-Thr 1.10E-44 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1010 - - - 0.0