Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1014 ATGGATTTGTTTAGTGTTGAAAGAGTGGTATCTTCCTCGGATGTGATGGATGAGGATGAGATCCCTAGGCAAAACCATCAGTTTTCTTCGACTGTAAAGTCTAACAGCAATAATCGCCCCGCCATTACCAGTGTTCATGAGCTTCTTGAATGTCCTGTGTGCACCAATTCCATGTATCCTCCAATCCACCAGTGCCACAATGGGCATACCCTCTGTTCGACCTGTAAAATAAGGGTACACAATTGCTGCCCAACTTGTCGACAAGAACTAGGGGACATAAGGTGTCTTGCATTGGAAAAAGTAGCAGAATCACTGGAACTACCATGCAAGTACTGCTCCCTTGGTTGTCCTGAGATATTTCCCTATTACAGCAAACTCAAACATGAAGCTGTCTGTAACTTCAGGCCATACAACTGCCCTTATGCTGGATCAGACTGTTCTGTCACTGGAGACATCCCTTACCTTGTTGCCCATCTAAGAGACGATCACAATGTTGATATGCATTCTGGGTGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCCGTGAAGTAGAAAATGCTACGTGGATGCTAACTGTCTTCCACTGTTTTGGACAGTACTTCTGTCTTCATTTTGAAGCCTTCCAGCTTGGGACGGCTCCAGTTTACATGGGATTTCTCCGATTCATGGGTGATGAAGCAGAAGCTCGAAATTACAGTTATAGCCTAGAGGTGGGAGGTAACGGCAGGAAACTGATTTGGGAGGGAAACCCTAGAAGCATAAGGGATGGTCACAAGAAGGTGAGAGATAGCCATGACGGGCTAATTATACAGCGGAATATGGCTCTTTTCTTCTCTGGAGGGGATAGGAAAGAGCTGAAGCTTAGAGTAACGGGCCGGATTTGGAAAGAACAGCCGAATCCGGGTGGAGCCTGTGTGCCTAATCTATGTAGTTAA 939 45.69 MDLFSVERVVSSSDVMDEDEIPRQNHQFSSTVKSNSNNRPAITSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKIRVHNCCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSDCSVTGDIPYLVAHLRDDHNVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGTAPVYMGFLRFMGDEAEARNYSYSLEVGGNGRKLIWEGNPRSIRDGHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQPNPGGACVPNLCS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7508112 7511164 + Conep18aG0104500.1 Cone18ag1014 457975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1014 312 Pfam Sina, TRAF-like domain 195 292 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone18ag1014 312 FunFam E3 ubiquitin-protein ligase SINAT3 101 159 - -
Cone18ag1014 312 CDD Sina 165 293 - -
Cone18ag1014 312 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 292 IPR008974 GO:0005515(InterPro)
Cone18ag1014 312 Pfam Sina, zinc finger 100 175 - -
Cone18ag1014 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 159 IPR013083 -
Cone18ag1014 312 FunFam E3 ubiquitin-protein ligase SINAT5-like 160 292 - -
Cone18ag1014 312 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 51 86 IPR049548 -
Cone18ag1014 312 SUPERFAMILY RING/U-box 35 91 - -
Cone18ag1014 312 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 33 294 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone18ag1014 312 SUPERFAMILY TRAF domain-like 104 296 - -
Cone18ag1014 312 CDD RING-HC_SIAHs 49 87 - -
Cone18ag1014 312 ProSiteProfiles Zinc finger RING-type profile. 51 87 IPR001841 -
Cone18ag1014 312 ProSiteProfiles Zinc finger SIAH-type profile. 104 164 IPR013010 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1014 Cone-Chr18:7508112 Cone5ag0480 Cone-Chr5:2021704 2.60E-167 dispersed
Cone1ag0982 Cone-Chr1:54923415 Cone18ag1014 Cone-Chr18:7508112 6.18E-201 wgd
Cone11ag0491 Cone-Chr11:2504830 Cone18ag1014 Cone-Chr18:7508112 5.31E-235 wgd
Cone14ag0012 Cone-Chr14:90430 Cone18ag1014 Cone-Chr18:7508112 1.14E-197 wgd
Cone15ag0013 Cone-Chr15:114500 Cone18ag1014 Cone-Chr18:7508112 2.01E-192 wgd
Cone18ag1014 Cone-Chr18:7508112 Cone5ag0687 Cone-Chr5:2947117 7.36E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1014 K04506 - mdm:103439323 570.081