Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag1014 | ATGGATTTGTTTAGTGTTGAAAGAGTGGTATCTTCCTCGGATGTGATGGATGAGGATGAGATCCCTAGGCAAAACCATCAGTTTTCTTCGACTGTAAAGTCTAACAGCAATAATCGCCCCGCCATTACCAGTGTTCATGAGCTTCTTGAATGTCCTGTGTGCACCAATTCCATGTATCCTCCAATCCACCAGTGCCACAATGGGCATACCCTCTGTTCGACCTGTAAAATAAGGGTACACAATTGCTGCCCAACTTGTCGACAAGAACTAGGGGACATAAGGTGTCTTGCATTGGAAAAAGTAGCAGAATCACTGGAACTACCATGCAAGTACTGCTCCCTTGGTTGTCCTGAGATATTTCCCTATTACAGCAAACTCAAACATGAAGCTGTCTGTAACTTCAGGCCATACAACTGCCCTTATGCTGGATCAGACTGTTCTGTCACTGGAGACATCCCTTACCTTGTTGCCCATCTAAGAGACGATCACAATGTTGATATGCATTCTGGGTGCACTTTTAACCATCGCTATGTCAAGTCTAATCCCCGTGAAGTAGAAAATGCTACGTGGATGCTAACTGTCTTCCACTGTTTTGGACAGTACTTCTGTCTTCATTTTGAAGCCTTCCAGCTTGGGACGGCTCCAGTTTACATGGGATTTCTCCGATTCATGGGTGATGAAGCAGAAGCTCGAAATTACAGTTATAGCCTAGAGGTGGGAGGTAACGGCAGGAAACTGATTTGGGAGGGAAACCCTAGAAGCATAAGGGATGGTCACAAGAAGGTGAGAGATAGCCATGACGGGCTAATTATACAGCGGAATATGGCTCTTTTCTTCTCTGGAGGGGATAGGAAAGAGCTGAAGCTTAGAGTAACGGGCCGGATTTGGAAAGAACAGCCGAATCCGGGTGGAGCCTGTGTGCCTAATCTATGTAGTTAA | 939 | 45.69 | MDLFSVERVVSSSDVMDEDEIPRQNHQFSSTVKSNSNNRPAITSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKIRVHNCCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSDCSVTGDIPYLVAHLRDDHNVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGTAPVYMGFLRFMGDEAEARNYSYSLEVGGNGRKLIWEGNPRSIRDGHKKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQPNPGGACVPNLCS | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7508112 | 7511164 | + | Conep18aG0104500.1 | Cone18ag1014 | 457975 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag1014 | 312 | Pfam | Sina, TRAF-like domain | 195 | 292 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cone18ag1014 | 312 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 101 | 159 | - | - | |
Cone18ag1014 | 312 | CDD | Sina | 165 | 293 | - | - | |
Cone18ag1014 | 312 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 164 | 292 | IPR008974 | GO:0005515(InterPro) | |
Cone18ag1014 | 312 | Pfam | Sina, zinc finger | 100 | 175 | - | - | |
Cone18ag1014 | 312 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 159 | IPR013083 | - | |
Cone18ag1014 | 312 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 160 | 292 | - | - | |
Cone18ag1014 | 312 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 51 | 86 | IPR049548 | - | |
Cone18ag1014 | 312 | SUPERFAMILY | RING/U-box | 35 | 91 | - | - | |
Cone18ag1014 | 312 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 33 | 294 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Cone18ag1014 | 312 | SUPERFAMILY | TRAF domain-like | 104 | 296 | - | - | |
Cone18ag1014 | 312 | CDD | RING-HC_SIAHs | 49 | 87 | - | - | |
Cone18ag1014 | 312 | ProSiteProfiles | Zinc finger RING-type profile. | 51 | 87 | IPR001841 | - | |
Cone18ag1014 | 312 | ProSiteProfiles | Zinc finger SIAH-type profile. | 104 | 164 | IPR013010 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone18ag1014 | Cone-Chr18:7508112 | Cone5ag0480 | Cone-Chr5:2021704 | 2.60E-167 | dispersed | |
Cone1ag0982 | Cone-Chr1:54923415 | Cone18ag1014 | Cone-Chr18:7508112 | 6.18E-201 | wgd | |
Cone11ag0491 | Cone-Chr11:2504830 | Cone18ag1014 | Cone-Chr18:7508112 | 5.31E-235 | wgd | |
Cone14ag0012 | Cone-Chr14:90430 | Cone18ag1014 | Cone-Chr18:7508112 | 1.14E-197 | wgd | |
Cone15ag0013 | Cone-Chr15:114500 | Cone18ag1014 | Cone-Chr18:7508112 | 2.01E-192 | wgd | |
Cone18ag1014 | Cone-Chr18:7508112 | Cone5ag0687 | Cone-Chr5:2947117 | 7.36E-204 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag1014 | K04506 | - | mdm:103439323 | 570.081 |