Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1018 ATGAGTAGAGAATTGATGGGTTCCAATCGCCATAAATTTTCAAGGTTTGTACCGTGGAGATCTTTAAGCTCCGAATTTTCCCTTGACGATGCAATTTATCCAGGAAGAAGCAGGTCATTCCTGAGAAGAATTTGGGACTGTATCCAAACAGGATCTGAGAGGTTCATGAGAACACGATTGAGTTCTCAATCTGCAGATGACCATAAGATAAAAAAGCAACTAGAACCAGGATCCAGAAATCAAGTTCTTGACCCACAGGGCCCGTTTCTTCATTTCTGGAATAAGATATTTGAATACTCATGTGTTCTAGCAGCTGCCTTGGACTCACTCTTCTTTTACATCCCAATGATTGACTCAACTGCCAAATGCCTTACTTTGGACGAACCATTGCAGACTACTGCTTGTGTTCTTCGTTCACTCATTGATGTCTTCTACGTTCTTCATATTATCTTTCAATTTCGAACTGGGTTTATCGCCCCTCCTTCCAGGATTTTCGGAAGAGGCGAGTTAGTTGATGATGCTTGGTTGATTGCACAGAGATACTTGTCTACGTACTTTATCATTGACATTTTATCTGTTCTTCCACTCCCACAGCTTGTAATACTAGTTGTGGTTCCAGCAACCAAAGGCCATGTTTCTATGGTAACAAAGAACCTGTTGGCATATGTAATATACGTGCAGTATGTTCCAAGACTTTTGAGAATTTTTCCACTCCATGAACAAGTAACTGGAACTTCTGGCCTCCTAAGATTCCTGACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCGTCCTATATTTGCTAGCCGCTCATATTGTTGGATCAACTTGGTATTTACTCTCCATCGAACGTGAAGTTAACTGCTGGGTTGATGCATGCAAGGGCAAGAACTGTGATAATGGTGCCCTTAAGTCTAAAATCATGGAAAAGAATAATTTCCGTCGCAAATTCTTTTACTGCTTTTGGTGGGGTCTCCGTGGTGTTAGTTCTCTTGGACAAAATCTGGAAACAAGCACTGACACTGGGGAGATTCTCTTTGTGGTGTTCATATCCATATTGGGATTAATTTTATTTTCTTCCCTCATTGGTAATATGCAGAAGTATCTGCAATCGTTAACTGTTAAGGTAGAGGAAATGAGAGTGAAGAGACGAGATGCAGAGCACTGGATGTCTCATCGTATGCTTCCTGAGTACTTGAAGAAACGCATTAGACGGTATGAGCAGTACAAATGGCAGGAAACAAGGGGTGTCCAAGAAGAAGAACTCATAGGAAACCTTCCTAAAGACCTCAAGCGAGAGATTAAGCGCCATCTCTGCTTGAATTTTCTCATGAAAGTGCGCATGTTTAAAGATATGGACAATCAACTTTTGGATGCAATGTGTGATCATATCAAGCCAGTGTTGTATACAGAAAATAGCACTATAATCCGAGAAGGAGAGCCAGTTGACTTGATGCTATTTATCATTAGAGGAAGTATAGTTGCTACAACTTCAGATAGCGGGAAACCAGGCTTTTCCGAACCCGCTTATTTGAAAGATGGTGACTTTTGTGGTGAAGAGCTTCTTACATGGGCCTTAGATATCCACTCCTCCCCAACTCTCCCCAACTCGACTAGAACTGTGAACACTCTAACTGAGGTTGAAGCATTTGCCTTAATGGCTCAAGATTGCAAGTCTGTCTCTACCCAATACAGACAACGCCATAAACAACTCCAAAAGTTCAGGTTCTACTCTTTCCAGTGGAGAGCATGGGCGGTCCATATAATACAAACGGCATGGCATCGTTACCAGAAGAGAAAGCTGAACAGGTACTTAATGGGAGTACAGGTCAGGTTGAATGATATGGAGAATAGAGTGGACAGCTCTGCTAATCTTAAAGCGGCTGCTTATTCTTCGAAGCTTTCGCCTCGACCACCTCCTCTACCTCCTCAGAAACCCACTGATCCTGCAGCTTAG 1959 42.37 MSRELMGSNRHKFSRFVPWRSLSSEFSLDDAIYPGRSRSFLRRIWDCIQTGSERFMRTRLSSQSADDHKIKKQLEPGSRNQVLDPQGPFLHFWNKIFEYSCVLAAALDSLFFYIPMIDSTAKCLTLDEPLQTTACVLRSLIDVFYVLHIIFQFRTGFIAPPSRIFGRGELVDDAWLIAQRYLSTYFIIDILSVLPLPQLVILVVVPATKGHVSMVTKNLLAYVIYVQYVPRLLRIFPLHEQVTGTSGLLRFLTETAWAGAAFNLVLYLLAAHIVGSTWYLLSIEREVNCWVDACKGKNCDNGALKSKIMEKNNFRRKFFYCFWWGLRGVSSLGQNLETSTDTGEILFVVFISILGLILFSSLIGNMQKYLQSLTVKVEEMRVKRRDAEHWMSHRMLPEYLKKRIRRYEQYKWQETRGVQEEELIGNLPKDLKREIKRHLCLNFLMKVRMFKDMDNQLLDAMCDHIKPVLYTENSTIIREGEPVDLMLFIIRGSIVATTSDSGKPGFSEPAYLKDGDFCGEELLTWALDIHSSPTLPNSTRTVNTLTEVEAFALMAQDCKSVSTQYRQRHKQLQKFRFYSFQWRAWAVHIIQTAWHRYQKRKLNRYLMGVQVRLNDMENRVDSSANLKAAAYSSKLSPRPPPLPPQKPTDPAA 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7534518 7538141 - Conep18aG0104900.1 Cone18ag1018 457979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1018 652 Pfam Ion transport protein 95 376 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1018 652 ProSiteProfiles cAMP/cGMP binding motif profile. 449 533 IPR000595 -
Cone18ag1018 652 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 302 610 - -
Cone18ag1018 652 Gene3D Jelly Rolls 447 567 IPR014710 -
Cone18ag1018 652 SMART cnmp_10 449 580 IPR000595 -
Cone18ag1018 652 FunFam Cyclic nucleotide-gated ion channel 1 376 440 - -
Cone18ag1018 652 MobiDBLite consensus disorder prediction 628 652 - -
Cone18ag1018 652 Gene3D Helix hairpin bin 376 440 - -
Cone18ag1018 652 MobiDBLite consensus disorder prediction 636 652 - -
Cone18ag1018 652 SUPERFAMILY cAMP-binding domain-like 378 572 IPR018490 -
Cone18ag1018 652 SUPERFAMILY Voltage-gated potassium channels 84 371 - -
Cone18ag1018 652 Gene3D - 96 374 - -
Cone18ag1018 652 CDD CAP_ED 449 557 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1018 Cone-Chr18:7534518 Cone2ag0580 Cone-Chr2:3369644 3.10E-195 dispersed
Cone11ag0487 Cone-Chr11:2478267 Cone18ag1018 Cone-Chr18:7534518 0 wgd
Cone14ag0024 Cone-Chr14:200364 Cone18ag1018 Cone-Chr18:7534518 1.29E-137 wgd
Cone15ag0026 Cone-Chr15:198240 Cone18ag1018 Cone-Chr18:7534518 7.20E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1018 K05391 - cit:102618760 697.582