Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1061 ATGGAAGGTGGCGATAATTGGGATCTCCACGCGGTGGTCAGAGGTTGTTGCTCCACCACCACCACCACCAACGCAACAACCGCCGCCGCCGCCACTATCTCCCCTTCTTTCACCGATCAATCAATTTTCTTAGCTGATTTTGACGTTGATGATGTAAGTAATAAATACTCTTCTTATAGTGACCATTTTAATTTCTCTCTCCAACAACAAGAACTACCACCCTTTGAAGAGAAGAACACTAATACCTTTGATCAGGAATTGCATGAGCTTTTCAGGCCCTTCTTCACCCTGTCTGCCAGATCTCCACCGCCACAGTCGCCTCAGTATCAGCAGCCTCAGCCACCGCCTCCTCTTCCTCCTCCTTCTCTATCTAATGTTCTTCAAATTACACAACAAAAACCTCTTCATCAAGTACTTAAGCAACAGTCTCATCCTCCCTCTCATGTCAATATACCAAGATCCAAACGAAGAAAGAACCAGCAAAAGACGGTATGTCAGGTACCGGCCGAGAATCTCTCTTCCGACATCTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCGCCTTATCCAAGGGGGTATTATAGGTGTAGCAGCTCAAAGGGGTGTTTAGCTCGGAAACAAGTGGAGCGGAGCAGATCCGACCCCGGAATTTTCATCGTGACCTATACAGCGGAGCACAACCATCCTGCGCCGACGCACCGGAACTCTCTCGCCGGTTCGACTCGTCAAAAGTCATCTTTCACAGCCGGCCAGACAGTCACTGTTGCAGGTGACGGAAGCAAATCTCAACCCCGAGATGTTCCGATTAGTGGCCCCTCCTCCTCCTCCTCGCCTTCTTTGGAGCTGGAAGACGATCAAGTTTTCATGCCTCAGATGATGATCGGTACGACCTGTGTGGTGGAGTGCAAGGAGGAGGAGAAGGAAGATTGGGGAGAAGAGGAGTTAGGGTTAGAAGACGACGATGAATTTGGAATATCGGAGATGCAGGTGGCTGTCGCCGGAGATGATAATTTGCTTGTGGATTGTTTTGAGGTTGATCAGGTGCTGGACGGGACAACGCGGCCGGAGGCGTCTGCTGAATGCTTTCCCGATCTGTTTCCTCCGAGTTTTGGTGGCCTTTCTTGGACCGTTAACAATGCCGCCACCGCCGCTGGTGGAATCTGA 1173 50.3 MEGGDNWDLHAVVRGCCSTTTTTNATTAAAATISPSFTDQSIFLADFDVDDVSNKYSSYSDHFNFSLQQQELPPFEEKNTNTFDQELHELFRPFFTLSARSPPPQSPQYQQPQPPPPLPPPSLSNVLQITQQKPLHQVLKQQSHPPSHVNIPRSKRRKNQQKTVCQVPAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERSRSDPGIFIVTYTAEHNHPAPTHRNSLAGSTRQKSSFTAGQTVTVAGDGSKSQPRDVPISGPSSSSSPSLELEDDQVFMPQMMIGTTCVVECKEEEKEDWGEEELGLEDDDEFGISEMQVAVAGDDNLLVDCFEVDQVLDGTTRPEASAECFPDLFPPSFGGLSWTVNNAATAAGGI 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7777622 7779360 - Conep18aG0109400.1 Cone18ag1061 458022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1061 390 SMART WRKY_cls 173 233 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1061 390 SUPERFAMILY WRKY DNA-binding domain 170 234 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1061 390 MobiDBLite consensus disorder prediction 97 166 - -
Cone18ag1061 390 Pfam WRKY DNA -binding domain 175 232 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1061 390 MobiDBLite consensus disorder prediction 226 284 - -
Cone18ag1061 390 Gene3D WRKY domain 157 227 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1061 390 MobiDBLite consensus disorder prediction 124 149 - -
Cone18ag1061 390 FunFam WRKY transcription factor 22 156 227 - -
Cone18ag1061 390 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 326 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone18ag1061 390 ProSiteProfiles WRKY domain profile. 168 234 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1061 390 MobiDBLite consensus disorder prediction 105 123 - -
Cone18ag1061 390 MobiDBLite consensus disorder prediction 231 262 - -
Cone18ag1061 390 MobiDBLite consensus disorder prediction 269 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1061 Cone-Chr18:7777622 Cone6ag1143 Cone-Chr6:8641222 1.77E-40 dispersed
Cone11ag0447 Cone-Chr11:2253478 Cone18ag1061 Cone-Chr18:7777622 1.12E-204 wgd
Cone14ag0050 Cone-Chr14:312009 Cone18ag1061 Cone-Chr18:7777622 1.77E-48 wgd
Cone14ag0387 Cone-Chr14:1810039 Cone18ag1061 Cone-Chr18:7777622 3.15E-61 wgd
Cone15ag0055 Cone-Chr15:335860 Cone18ag1061 Cone-Chr18:7777622 3.35E-47 wgd
Cone15ag0424 Cone-Chr15:2001244 Cone18ag1061 Cone-Chr18:7777622 1.23E-59 wgd
Cone18ag1061 Cone-Chr18:7777622 Cone6ag0812 Cone-Chr6:4127490 2.30E-41 wgd
Cone18ag1061 Cone-Chr18:7777622 Cone9ag0811 Cone-Chr9:3902804 4.63E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45215 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1061 K13425 - vvi:100256849 259.225