Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1088 ATGGATCGGGGGGACCCTATGGCGCTATCGGGCACACAATCTTACTATACGCAGCAGAGCCAGGGTCTGACTCAATCTCCATTACAACAAGGGTCCCACACTGGCCTTAGGTCCATAACTAATCCGAACATGCCGTTTCAGGCCAATGCCGGTGGGCCTGGAAACAGTACCGGCCCGACTATCCTGCCGTTAGAGACTGCCGGTGCCTCCTCCGGTCTTTCACCTCACCAAGGGGTCAATTTGAGTGGAGGAGGAGCCTCATCTGGTGAGCCCATGAAGAGGAAACGGGGCAGGCCCAGGAAGTATGGACCTGATGGTGGTGGTGGTGGTGGTGGCAGTGGGCCCATGTCCTTGGCGTTGACCCCATCATCATCTGCTACTCCAGTCGGTACGCCCGGTACTCAAGGAGGGTCCCACCAGAAACGGAGCAGAGGGCGGCCACCCGGTTCGGGGAAGAAGCATCAACTAACTTCTTCTATTGGTGGATTGCTGTCTGGTTCTGCCGGGATAGGCTTCACTCCTCATATTATCACCATTGGAGTTGGAGAAGATATAGCCACAAAAATTATGTCGTTTTCGCAGCAAGGGCCGAGAGCTGTATGTGTGTTGTCAGCCAATGGTGCCATATCTACTGTGACTTTACGTCAACCCTCAACAAGCGGAGGCACTGTCACATATGAGGGTCGGTTTGAGATAGTATGTCTGTCAGGTTCATATTTGGTCACCGATAGCAGTGGGACCCGCAACCGCTCTGGTGGTTTAAGCATCTCCCTTGCCAGCCCTGATGGTCGAATAATTGGAGGCGGGGTTGGAGGAGTTCTCACTGCAGCTAGCCCTATTCAGGTGATCGTAGGAAGCTTTATGTGGGGAAGTTCAAATACGAAGAACAACAAGAAGAGGGAGGCTGAAGGAGGGGTGATAGACTCAGACCGAAACATGATGGACAATAACATGGACCCGCTAAGCAACGTTCCACCTCATGCTCCAACCAACTCAATAGGTGTTTGGCCCCTATCTCAACAAATCGATATCCGGAACGCCCATCATGTTGACATTGATTTGATGCGAGGTTGA 1074 52.7 MDRGDPMALSGTQSYYTQQSQGLTQSPLQQGSHTGLRSITNPNMPFQANAGGPGNSTGPTILPLETAGASSGLSPHQGVNLSGGGASSGEPMKRKRGRPRKYGPDGGGGGGGSGPMSLALTPSSSATPVGTPGTQGGSHQKRSRGRPPGSGKKHQLTSSIGGLLSGSAGIGFTPHIITIGVGEDIATKIMSFSQQGPRAVCVLSANGAISTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDSSGTRNRSGGLSISLASPDGRIIGGGVGGVLTAASPIQVIVGSFMWGSSNTKNNKKREAEGGVIDSDRNMMDNNMDPLSNVPPHAPTNSIGVWPLSQQIDIRNAHHVDIDLMRG 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7983114 7986860 + Conep18aG0112100.1 Cone18ag1088 458049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1088 357 SMART AT_hook_2 93 105 IPR017956 GO:0003677(InterPro)
Cone18ag1088 357 SMART AT_hook_2 141 153 IPR017956 GO:0003677(InterPro)
Cone18ag1088 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 287 IPR005175 -
Cone18ag1088 357 MobiDBLite consensus disorder prediction 10 64 - -
Cone18ag1088 357 ProSiteProfiles PPC domain profile profile. 168 310 IPR005175 -
Cone18ag1088 357 MobiDBLite consensus disorder prediction 1 160 - -
Cone18ag1088 357 MobiDBLite consensus disorder prediction 117 141 - -
Cone18ag1088 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 172 291 - -
Cone18ag1088 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 310 IPR039605 GO:0003680(InterPro)
Cone18ag1088 357 FunFam AT-hook motif nuclear-localized protein 1-like 174 304 - -
Cone18ag1088 357 CDD DUF296 173 287 IPR005175 -
Cone18ag1088 357 Gene3D - 174 306 - -
Cone18ag1088 357 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0311 Cone-Chr12:1708357 Cone18ag1088 Cone-Chr18:7983114 1.12E-37 dispersed
Cone18ag1088 Cone-Chr18:7983114 Cone9ag0724 Cone-Chr9:3455326 1.58E-67 dispersed
Cone17ag1478 Cone-Chr17:9974559 Cone18ag1088 Cone-Chr18:7983114 9.48E-71 transposed
Cone11ag0417 Cone-Chr11:2068492 Cone18ag1088 Cone-Chr18:7983114 2.17E-206 wgd
Cone14ag0350 Cone-Chr14:1623455 Cone18ag1088 Cone-Chr18:7983114 3.82E-99 wgd
Cone15ag0383 Cone-Chr15:1761417 Cone18ag1088 Cone-Chr18:7983114 3.38E-101 wgd
Cone18ag1088 Cone-Chr18:7983114 Cone6ag0774 Cone-Chr6:3945485 1.34E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1088 - - - 0.0