Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag1088 | ATGGATCGGGGGGACCCTATGGCGCTATCGGGCACACAATCTTACTATACGCAGCAGAGCCAGGGTCTGACTCAATCTCCATTACAACAAGGGTCCCACACTGGCCTTAGGTCCATAACTAATCCGAACATGCCGTTTCAGGCCAATGCCGGTGGGCCTGGAAACAGTACCGGCCCGACTATCCTGCCGTTAGAGACTGCCGGTGCCTCCTCCGGTCTTTCACCTCACCAAGGGGTCAATTTGAGTGGAGGAGGAGCCTCATCTGGTGAGCCCATGAAGAGGAAACGGGGCAGGCCCAGGAAGTATGGACCTGATGGTGGTGGTGGTGGTGGTGGCAGTGGGCCCATGTCCTTGGCGTTGACCCCATCATCATCTGCTACTCCAGTCGGTACGCCCGGTACTCAAGGAGGGTCCCACCAGAAACGGAGCAGAGGGCGGCCACCCGGTTCGGGGAAGAAGCATCAACTAACTTCTTCTATTGGTGGATTGCTGTCTGGTTCTGCCGGGATAGGCTTCACTCCTCATATTATCACCATTGGAGTTGGAGAAGATATAGCCACAAAAATTATGTCGTTTTCGCAGCAAGGGCCGAGAGCTGTATGTGTGTTGTCAGCCAATGGTGCCATATCTACTGTGACTTTACGTCAACCCTCAACAAGCGGAGGCACTGTCACATATGAGGGTCGGTTTGAGATAGTATGTCTGTCAGGTTCATATTTGGTCACCGATAGCAGTGGGACCCGCAACCGCTCTGGTGGTTTAAGCATCTCCCTTGCCAGCCCTGATGGTCGAATAATTGGAGGCGGGGTTGGAGGAGTTCTCACTGCAGCTAGCCCTATTCAGGTGATCGTAGGAAGCTTTATGTGGGGAAGTTCAAATACGAAGAACAACAAGAAGAGGGAGGCTGAAGGAGGGGTGATAGACTCAGACCGAAACATGATGGACAATAACATGGACCCGCTAAGCAACGTTCCACCTCATGCTCCAACCAACTCAATAGGTGTTTGGCCCCTATCTCAACAAATCGATATCCGGAACGCCCATCATGTTGACATTGATTTGATGCGAGGTTGA | 1074 | 52.7 | MDRGDPMALSGTQSYYTQQSQGLTQSPLQQGSHTGLRSITNPNMPFQANAGGPGNSTGPTILPLETAGASSGLSPHQGVNLSGGGASSGEPMKRKRGRPRKYGPDGGGGGGGSGPMSLALTPSSSATPVGTPGTQGGSHQKRSRGRPPGSGKKHQLTSSIGGLLSGSAGIGFTPHIITIGVGEDIATKIMSFSQQGPRAVCVLSANGAISTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDSSGTRNRSGGLSISLASPDGRIIGGGVGGVLTAASPIQVIVGSFMWGSSNTKNNKKREAEGGVIDSDRNMMDNNMDPLSNVPPHAPTNSIGVWPLSQQIDIRNAHHVDIDLMRG | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7983114 | 7986860 | + | Conep18aG0112100.1 | Cone18ag1088 | 458049 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag1088 | 357 | SMART | AT_hook_2 | 93 | 105 | IPR017956 | GO:0003677(InterPro) | |
Cone18ag1088 | 357 | SMART | AT_hook_2 | 141 | 153 | IPR017956 | GO:0003677(InterPro) | |
Cone18ag1088 | 357 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 174 | 287 | IPR005175 | - | |
Cone18ag1088 | 357 | MobiDBLite | consensus disorder prediction | 10 | 64 | - | - | |
Cone18ag1088 | 357 | ProSiteProfiles | PPC domain profile profile. | 168 | 310 | IPR005175 | - | |
Cone18ag1088 | 357 | MobiDBLite | consensus disorder prediction | 1 | 160 | - | - | |
Cone18ag1088 | 357 | MobiDBLite | consensus disorder prediction | 117 | 141 | - | - | |
Cone18ag1088 | 357 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 172 | 291 | - | - | |
Cone18ag1088 | 357 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 43 | 310 | IPR039605 | GO:0003680(InterPro) | |
Cone18ag1088 | 357 | FunFam | AT-hook motif nuclear-localized protein 1-like | 174 | 304 | - | - | |
Cone18ag1088 | 357 | CDD | DUF296 | 173 | 287 | IPR005175 | - | |
Cone18ag1088 | 357 | Gene3D | - | 174 | 306 | - | - | |
Cone18ag1088 | 357 | MobiDBLite | consensus disorder prediction | 70 | 84 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0311 | Cone-Chr12:1708357 | Cone18ag1088 | Cone-Chr18:7983114 | 1.12E-37 | dispersed | |
Cone18ag1088 | Cone-Chr18:7983114 | Cone9ag0724 | Cone-Chr9:3455326 | 1.58E-67 | dispersed | |
Cone17ag1478 | Cone-Chr17:9974559 | Cone18ag1088 | Cone-Chr18:7983114 | 9.48E-71 | transposed | |
Cone11ag0417 | Cone-Chr11:2068492 | Cone18ag1088 | Cone-Chr18:7983114 | 2.17E-206 | wgd | |
Cone14ag0350 | Cone-Chr14:1623455 | Cone18ag1088 | Cone-Chr18:7983114 | 3.82E-99 | wgd | |
Cone15ag0383 | Cone-Chr15:1761417 | Cone18ag1088 | Cone-Chr18:7983114 | 3.38E-101 | wgd | |
Cone18ag1088 | Cone-Chr18:7983114 | Cone6ag0774 | Cone-Chr6:3945485 | 1.34E-61 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag1088 | - | - | - | 0.0 |