Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1103 ATGAGTTTTGGGGGTTTTCTAGACAACAGTACTTCTACCGGCAGTAGTAACTTCGTCGGCGATTTACAACCTTTCACAAATACCGACGTAAACAACAACAGTATAAGCCACAACAATAATATTATGCCTTCTACTAGTACAATCACTCGCCCGCCTCGCCTCGTCACTCAATCCTTAACCAAATCCATGTTCAACTCTCCTGGACTTTCCCTCGCTCTTACAAATATGGATCATGGGCAAGGAGAGATGATGGACAGTACTCCAATAATGGCGGGTGATGATAATCAGAACTTTGAGGCTAATAATGTCTGGAAAAGAAGCAGAGAAGAACTAGAACATGAGAGTAGATCTGGGAGTGATAACATGGATGGTGGCTCCGGCGACGATCAAGACGCCGCCGATAATAACCCTCCTAGAAAAAAACGCTACCACCGCCATACTCCTCAGCAAATCCAAGAGCTAGAGGCTTTGTTCAAGGAGTGCCCTCATCCCGATGAGAAGCAAAGATTGGAGCTAAGCAAAAGGCTTTGTTTGGAAACTAGGCAAGTCAAATTCTGGTTCCAAAATCGTCGAACCCAAATGAAGACACAATTGGAGCGGCATGAGAATACATTACTCAGGCAAGAAAACGATAAGCTTAGAGCAGAGAACATGTCGATCCGAGAAGCCATGAGAAACCCCATGTGCTCTAACTGTGGTGGGCCTGCTATTATTGGTGAAATCTCGCTTGAGGAGCAGCATCTCCAGATCGAGAATGCCCGGTTGAAAGATGAGCTGGACCGGGTTTGTGCCCTAGCGGGCAAGTTTCTGGGTCGGCCCATTTCGTCGTTGGCTAACTCTATGGCACATACATTGCCAAACTCGAGCTTGGAGCTTGGAGTTGGAAGTAATGGATTAGGAGGGATGGGCCCTTCAACAATGCCCGTGGGGCCTGATTATGGAGGGGGAATTTCTACTACCTTGCAGGTCTTGCCAAGTAGTACTAGTAGACCTATGGGGGGAGTAGTTTCGGGTATTGATCTTTCAATTGAGAGGTCTATGTTCTTAGAGCTTGCTTTGGTTGCTATGGATGAGCTGGTTAAGATGGCTCACACCGATGAGCCGCTTTGGGTCCGGAGCTTAGAAGGAGGAAGGGAAATTCTAAACCATGAAGAATATTCTAGATCATTTACTCCTTGCATTGGCTTGAAACCGAATGGTTTTGTCACGGAAGCTTCTAGAGAGTCCGGTATCGTCATCATCAATAGCTTGGCTCTGGTCGAAACTCTAATGGACTCGAACCGCTGGGCGGAGATGTTTCCGTGTATGATTGCGAGAAGCACCACCATAGACGTGATCTCTAACGGCATGGGTGGGACCCGGAACGGAGCACTTCAACTGATGAATGCCGAGCTTCAAGTACTTTCGCCTTTGGTTCCGATTCGGGGAGTGAACTTCCTTAGATTCTGCAAACAACATGCCGAAGGAGTTTGGGCGGTTGTAGACGTGTCGATCGACGCCATGAGAGAAGCTGCTCCCGGTGGGCCCACACCGTTTGCAAACTGTAGGAGGCTTCCTTCTGGCTGTGTTGTCCAAGATATGCCTAATGGCTACTCCAAGGTTACATGGGTTGAACATGCAGAATACGATGAGACTCAAGTCCATCAACTCTACCAAACCTTGCTAAGCTCTGGCATGGGGTTCGGGGCCCAACGTTGGGTCGCCACCCTCCAACGCCAGTGCGAATGCCTTGCCATACTTATCTCCTCCACCGTCCCATCCCGAGAACACACTGTGGGTCCAGCTATAACGGCAGGTGGGAGGAGGAGCATGCTAAAGCTAGCTCAGAGGATGACGGACAACTTCTGTGCCGGGGTGTGTGCTTCTACGGTCCACAAATGGAACAAGCTCAATGTCGGAAATGTGGGTGAGGATGTTCGGGTCATGACCCGAAAGAGTATTGATGATCCAGGCGAGCCGCCTGGTGTTGTCCTCAGTGCGGCCACCTCAGTTTGGCTCCCGGTCTCTCCCCAGAGGCTGTTTGACTTTCTTCGTGACGAGCGGTTGAGAAGCGAGTGGGACATACTTTCCAATGGCGGTCCCATGCAAGAGATGGCCCACATTGCCAAAGGCCAAGATCACGGCAACTGCGTCTCGCTCCTGCGAGCTAGCGCAATGAAAGCGAACCACAGTAGCATGCTGATACTGCAGGAGACATGCATAGACGCGGCTGGATCGCTCGTGGTGTACGCGCCGGTGGATATCCCGGCCATGCATGTAGTCATGAACGGTGGAGATTCTGCCTACGTGGCTCTACTCCCATCAGGCTTCGCCATTGTTCCAGATGGACCAGGCTACCGTGAGCCAGCAGCCCATGTTAATGGTCCAGACGGGGGTGGCGGCAGTCCACAGAGAGTGAGGGGGTCCCTCCTAACCGTGGCCTTTCAGATCCTTGTGAATAGCCTACCTACGGACAAGCTCACAGTAGAGTCGGTGGAGACGGTCAACAATCTCATCTCGTGCACTGTGCAGAAGATCAAAGCCGCCCTTCATTGCGAAAGTTGA 2544 50.83 MSFGGFLDNSTSTGSSNFVGDLQPFTNTDVNNNSISHNNNIMPSTSTITRPPRLVTQSLTKSMFNSPGLSLALTNMDHGQGEMMDSTPIMAGDDNQNFEANNVWKRSREELEHESRSGSDNMDGGSGDDQDAADNNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIREAMRNPMCSNCGGPAIIGEISLEEQHLQIENARLKDELDRVCALAGKFLGRPISSLANSMAHTLPNSSLELGVGSNGLGGMGPSTMPVGPDYGGGISTTLQVLPSSTSRPMGGVVSGIDLSIERSMFLELALVAMDELVKMAHTDEPLWVRSLEGGREILNHEEYSRSFTPCIGLKPNGFVTEASRESGIVIINSLALVETLMDSNRWAEMFPCMIARSTTIDVISNGMGGTRNGALQLMNAELQVLSPLVPIRGVNFLRFCKQHAEGVWAVVDVSIDAMREAAPGGPTPFANCRRLPSGCVVQDMPNGYSKVTWVEHAEYDETQVHQLYQTLLSSGMGFGAQRWVATLQRQCECLAILISSTVPSREHTVGPAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNVGNVGEDVRVMTRKSIDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMKANHSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGYREPAAHVNGPDGGGGSPQRVRGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKAALHCES 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8049457 8055190 - Conep18aG0113800.1 Cone18ag1103 458064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1103 847 Coils Coil 191 226 - -
Cone18ag1103 847 CDD START_ArGLABRA2_like 345 575 - -
Cone18ag1103 847 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677(InterPro)
Cone18ag1103 847 MobiDBLite consensus disorder prediction 1 21 - -
Cone18ag1103 847 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone18ag1103 847 FunFam Homeobox-leucine zipper protein HDG1 126 213 - -
Cone18ag1103 847 SMART START_1 350 576 IPR002913 GO:0008289(InterPro)
Cone18ag1103 847 CDD homeodomain 139 197 IPR001356 GO:0003677(InterPro)
Cone18ag1103 847 MobiDBLite consensus disorder prediction 107 147 - -
Cone18ag1103 847 SUPERFAMILY Homeodomain-like 123 197 IPR009057 -
Cone18ag1103 847 SUPERFAMILY Bet v1-like 600 830 - -
Cone18ag1103 847 ProSiteProfiles START domain profile. 341 579 IPR002913 GO:0008289(InterPro)
Cone18ag1103 847 MobiDBLite consensus disorder prediction 30 49 - -
Cone18ag1103 847 Pfam START domain 351 576 IPR002913 GO:0008289(InterPro)
Cone18ag1103 847 Pfam Homeodomain 140 195 IPR001356 GO:0003677(InterPro)
Cone18ag1103 847 SUPERFAMILY Bet v1-like 343 576 - -
Cone18ag1103 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 117 846 IPR042160 -
Cone18ag1103 847 Gene3D - 127 213 - -
Cone18ag1103 847 FunFam Homeobox-leucine zipper protein GLABRA 2 350 575 - -
Cone18ag1103 847 SMART HOX_1 138 201 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0698 Cone-Chr16:8232493 Cone18ag1103 Cone-Chr18:8049457 2.91E-143 dispersed
Cone17ag0165 Cone-Chr17:813315 Cone18ag1103 Cone-Chr18:8049457 8.93E-187 dispersed
Cone18ag1103 Cone-Chr18:8049457 Cone8ag1442 Cone-Chr8:11179665 3.02E-266 dispersed
Cone11ag0406 Cone-Chr11:2008083 Cone18ag1103 Cone-Chr18:8049457 0 wgd
Cone14ag0104 Cone-Chr14:484646 Cone18ag1103 Cone-Chr18:8049457 1.56E-300 wgd
Cone14ag0331 Cone-Chr14:1544963 Cone18ag1103 Cone-Chr18:8049457 3.46E-267 wgd
Cone15ag0108 Cone-Chr15:520933 Cone18ag1103 Cone-Chr18:8049457 2.72E-291 wgd
Cone15ag0360 Cone-Chr15:1665508 Cone18ag1103 Cone-Chr18:8049457 1.14E-299 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45220 PF12697 Abhydrolase_6 3.60E-19 CL0028 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1103 K09338 - csv:101222248 1278.85