Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1119 ATGGTGAGAGGAAAGACTCAGATGAAGAGAATAGAGAACACGACAAGCCGGCAAGTAGCATTCTCTAAGCGCCGAAACGGGCTTCTGAAGAAGGCCTTTGAGCTCTCAGTGCTTTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCTACAAGAGGCAAGCTCTACGAATTTGCAAGCTCCAGCATGCATTCAACCATTGAGCGCTATAAGAAGCATAGCAAAGAAGCTGGAACCACTTCCAGATCTCCTCAACAACATACTCAACAATTGGAGCTTCAGATCACAAATATGAAGAAGAAGATAGAGCTACTTGAAGTTGCAAAAAGGAATCTAGTAGGAGAAGATTTAGGATCGTGTTCGGTCGAAGAACTTCAACAGATAGAACAACAATTGGAGAGGAGTGTCAGAAACATCAGAGCAAGAAAGACACAGGTTTACAAAGAACAGATTGAACAACTAAAGGAAAAGGAAAGACTCCTAGAAGCTGAAAATGCTAGCCTACATGAGAAGCTTGAATATACCGTTCAAACCCAGCAAGCACCTAACGAACCTAGAGAAAGCAGTCCGATATCGGATGTCAATACCGGATTGTTCGTGGGATGGCCCGAAACAAGGGGAGAGCGATTTCTCTTACAAAATTGA 642 43.3 MVRGKTQMKRIENTTSRQVAFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGKLYEFASSSMHSTIERYKKHSKEAGTTSRSPQQHTQQLELQITNMKKKIELLEVAKRNLVGEDLGSCSVEELQQIEQQLERSVRNIRARKTQVYKEQIEQLKEKERLLEAENASLHEKLEYTVQTQQAPNEPRESSPISDVNTGLFVGWPETRGERFLLQN 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8126848 8130153 + Conep18aG0115400.1 Cone18ag1119 458080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1119 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 180 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone18ag1119 213 Pfam K-box region 82 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone18ag1119 213 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone18ag1119 213 FunFam MADS-box transcription factor 21 13 81 - -
Cone18ag1119 213 Coils Coil 121 170 - -
Cone18ag1119 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone18ag1119 213 MobiDBLite consensus disorder prediction 70 89 - -
Cone18ag1119 213 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone18ag1119 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone18ag1119 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone18ag1119 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone18ag1119 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone18ag1119 213 Coils Coil 87 114 - -
Cone18ag1119 213 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone18ag1119 213 Gene3D - 13 102 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone18ag1119 213 MobiDBLite consensus disorder prediction 175 194 - -
Cone18ag1119 213 ProSiteProfiles K-box domain profile. 87 183 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1119 Cone-Chr18:8126848 Cone6ag0933 Cone-Chr6:4798470 4.46E-38 dispersed
Cone11ag0371 Cone-Chr11:1820746 Cone18ag1119 Cone-Chr18:8126848 2.38E-120 wgd
Cone14ag0123 Cone-Chr14:568720 Cone18ag1119 Cone-Chr18:8126848 3.63E-61 wgd
Cone15ag0131 Cone-Chr15:606443 Cone18ag1119 Cone-Chr18:8126848 7.86E-63 wgd
Cone15ag0346 Cone-Chr15:1607150 Cone18ag1119 Cone-Chr18:8126848 5.77E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45223 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1119 - - - 0.0