Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1132 ATGGACAACCTAATAGCACGCGGCGGCGGCCGGCCGGTACTGCCACCACAATTTCTCTCCGGCCTGCCAGATCTCCACCTCCACCCCCACCCCCACCACTACCAAAACCAACAACACCAACAAACCTCCGAAGAAGACGACGAACAAGCCGAAAGCCAGAACCGGAGCGGTGGAAGCAGCTTAAACCACCACCACAACAACTCTGACCAGCCCTCTAACGGACCGGACTCATCGACAAGGTCACCATCTTCTATCAGAAGGCCACGCGGCCGCCCGTCCGGTTCAAAAAACAAACCCAAACCGCCCATCATAATAACCCGAGACAGTCCCAACGCGCTCCGGTCCCACGTGATGGAAATCGCCAACGAATGTGACATCATGGAAAGCCTGACCACCTTCGCAAGGCGGAGGCAGAGAGGGGTTTGTATTCTAAGCGGGACAGGAACCGTGGCTAATGTTACTCTAAAGCAGCCGGCTTCGCCTGGTGCGGTGGTTACTTTACATGGAAGGTTTGAAATCTTATCGCTATCCGGTTCGTTTCTTCCGCCTCCAGCCCCGCCTGCCGCGTCGGGTTTGACGATATATCTGGCCGGAGGGCAAGGGCAGGTGTTGGGAGGGAGTGTGGTGGGACACCTTTTAGCGGCGGGGCCTGTAGTTGTTATGGCAGCTTCTTTTGGTAATGCCGCGTATGAGAGGTTGCCGCTTGAGGATGAAGAAATTGTTCCGGCCGGTACTGGCGGTGGTCCGGTGCTGGAAAACAGTCCGATCGGAGGACAGCAGCAGTTGTTGAATGGCGATAGCTCTAACGCGTCGTCTGGTTTGTTTCATGGGATGCCGCAAAATTTACTAAATGCACCTGATCAGGCATTCTGGACCACACCTCGTCCACCTTATTGA 897 55.52 MDNLIARGGGRPVLPPQFLSGLPDLHLHPHPHHYQNQQHQQTSEEDDEQAESQNRSGGSSLNHHHNNSDQPSNGPDSSTRSPSSIRRPRGRPSGSKNKPKPPIIITRDSPNALRSHVMEIANECDIMESLTTFARRRQRGVCILSGTGTVANVTLKQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVLGGSVVGHLLAAGPVVVMAASFGNAAYERLPLEDEEIVPAGTGGGPVLENSPIGGQQQLLNGDSSNASSGLFHGMPQNLLNAPDQAFWTTPRPPY 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8173667 8174563 + Conep18aG0116800.1 Cone18ag1132 458093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1132 298 Gene3D - 113 241 - -
Cone18ag1132 298 PIRSF ESCAROLA 22 295 IPR014476 GO:0003680(InterPro)
Cone18ag1132 298 MobiDBLite consensus disorder prediction 53 90 - -
Cone18ag1132 298 CDD DUF296 114 225 IPR005175 -
Cone18ag1132 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 44 261 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cone18ag1132 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 114 225 IPR005175 -
Cone18ag1132 298 ProSiteProfiles PPC domain profile profile. 110 247 IPR005175 -
Cone18ag1132 298 MobiDBLite consensus disorder prediction 254 278 - -
Cone18ag1132 298 MobiDBLite consensus disorder prediction 1 110 - -
Cone18ag1132 298 MobiDBLite consensus disorder prediction 243 278 - -
Cone18ag1132 298 FunFam AT-hook motif nuclear-localized protein 113 240 - -
Cone18ag1132 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 110 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1132 Cone-Chr18:8173667 Cone8ag0353 Cone-Chr8:2019529 1.14E-96 dispersed
Cone11ag0388 Cone-Chr11:1912189 Cone18ag1132 Cone-Chr18:8173667 1.60E-168 wgd
Cone14ag0141 Cone-Chr14:683830 Cone18ag1132 Cone-Chr18:8173667 1.80E-78 wgd
Cone14ag0306 Cone-Chr14:1406920 Cone18ag1132 Cone-Chr18:8173667 4.94E-18 wgd
Cone15ag0149 Cone-Chr15:720428 Cone18ag1132 Cone-Chr18:8173667 1.07E-75 wgd
Cone15ag0333 Cone-Chr15:1527904 Cone18ag1132 Cone-Chr18:8173667 5.13E-18 wgd
Cone18ag1132 Cone-Chr18:8173667 Cone6ag0720 Cone-Chr6:3625087 3.94E-21 wgd
Cone18ag1132 Cone-Chr18:8173667 Cone9ag0724 Cone-Chr9:3455326 1.41E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1132 - - - 0.0