Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1137 ATGGGTCGCTGGTCATGTCACCTTTTCAACAACCCCGTGTCTTCCTCACTTTTTCGGAAACTCTTTCTACTTCTCTGTGTCTGCTCCATCACTCAAATCGAAGCTCTTACGGGTTACTCGGACAAATCGGTGCTTCTTCAGCTCAAGAATTCGTTATCGGACGAGTCGGGATTACTCTCGAGCTGGAGTTCCAACAGTTCCGATCATTGTTCATGGTTCGGAATCTTATGCGACTTCAATTCTAGAGTTATCTCGCTCTACATTTTGGGAAATGGCGGCGGCGAGGGTAAGAAAAATTCAAGTGCTTTCTCGTGCTCCGATTTCTCTATATTTCCGCTTTATGGATTGGGGATTAGGAGGAATTGCGCAGGGAGTCGAGGGAAACTTTCTGGTAGTGTCTCGCCTGTCATTTCGGAGCTGAGTGAGCTTAGAAACCTGTCGCTCCCTTTCAATGGATTTGTTGGTGAAGTCCCTACTGAAATCTGGGCTATGAAGAGCTTAGAGGTTCTTGATCTAGAGGGAAATTCAATTACTGGTATTCTTCCAGACAAATTTTCTGGATTGAGGAATTTGCGGGTTCTCAATCTCGGATTCAACAGCATCCAAGGGGGAATTCCGGCCTCACTTTCGAGCTGTTTCAATTTAGAGATCTTAAATTTGGCTGGAAATCAGTTTAACGGGACGATTCCGGGTTTTCTCAGTCAGTTGAAAGGGGTATATATGTCTTTTAACTCATTCACTGGATCTATTCCTAGTGAGCTTGGGGATGATTGTGGGAAGCTTGAGCATTTAGATTTGTCCGGTAATTGGTTGGTTCAAGGGATTCCAAGCAGTTTGGGGAATTGCAGTCAGTTACAGGCATTGTTGCTATATTCAAACATGTTGGAAGAGGGAATTCCGTCCGAAATCGGTAAGCTTCAAAAGCTCAAAGTGCTTGATATTTCTAGGAACAGTTTAAGTGGTTCTATACCTCCTCAGCTTGGAAACTGTTCAGAATTGTCTGTCCTCGTGCTCTCAAATCTATTTCAAGTTAATAACACTTATGGGAATTCTCCATTAGATGGGATGAGTAATGAGATCAGTACAGATGAGTATAATTTCTTTCAGGGTGAAATCCCCGAGGGAATTTCAATCCTTCCAAAGCTGAGGATTTTGTGGGCTCCGCGGGTGATCCTTGAGGGTAGATTCCCAAGCAATTGGGGAAGATGTGAAAGCCTAGAGGTGATCAACTTGGCTCAAAATCTTCTCTCTGGTGAGCTACCAAGAGGGTTAAGCCAATGCAAGAAGCTGCAATTCCTTGACCTGAGCTCAAACAGGCTTTCCGGGCCACTAAATCAAGACCTTCCGGTTCCTTGTATGACCTTTTCCGATATCAGTGGCAACAAAATGGTGGGTCCCATCCCAGTTTTCAGTAAAAACCCCTGCCCACCGGTTTCTTACTCATTGAACAAATTTTCTTTTGAATCAGACCATCCATTTTCTCAGTATCTTTGGTTTTTCGCTACTAGAGCTCGAGCTTCAAACAAATTGCCAACTGGTGATGGTGATAGTCTCGTAGTATTTCACAATTTTGGGCAGAATAAATTTTCCGGTAGCTTACAGTCATTGGCCATTGCACCCGAAAGATTAGGAAAGCAAACTGTTTATGCATATCTTGCTGGAGGAAACAAGCTCACTGGACCATTTCCTCGTATTTTACTCGAAAATTGTGGAGGACTAAAAGCTCTTATTGTGAATGTTAGTAATAACAAGATATCTGGGCCGATTCCAGGTGAAATCGGTGAAATGTGTGCATCTCTTAAAATCTTGGATGCATCTGAGAATCAGATTAACGGGTCAATCCCCTCGAGTTTTGGGAAATTGTCTTTAGATGTTATAAACTTGAGCTGGAACCTTTTGCAGAGTGGGATACCCTTCAGTCTAGGCCGAATTGCCACTCTGAAGTATCTCTCTTTGGCACATAATAACCTGAAAGGTCCCATCCCTTCCAGCTTGGGACAGTTGCACGTTCTGCAAAGCTTAGATCTTTCTTCCAACTCTCTCACCGGAGAAATCCCACAAGATGTGGTAAAACTCAGAAGCTTGACCCTTCTCCTCCTCAACAACAATAAACTCTCTGGCCAGATCCCAGATGGGCTAGCAAATGTGTTCACTCTCTCCTCATTCAACGTTTCATTCAACAACTTGTCAGGGTCGCTTCCATCAAATAACAATTTGATGAAATGTAGTAGTGTTCTTGGAAACCCTCTTTTACAGCCATGCCGTATGTTCTCCCTTACCGTCCCATCATCTGATTTGGCATGTTCCAATCTCTCTGCTTCACCTTCAAATGATCCAACCCCAAGTAGTGGCAATGGTAGTGGCATGAATTCGATCGAGATAGCATCCATAACCTCCGCATCAGCTATTGTCTCGGTCCTTCTAGCACTAATTGTCTTGTTTATATATTCCAGGAAATGGAAACCCAGGTCCAAAATCCACGGTTCATCCAAAAAGGAAGTCATTGTCTTCACAGACATAGGGGTCCAACTAACTTTTGAAAATGTCGTCCAAGCCACTAATAACTTCAATGCTTCCAATTGTATTGGAAGCGGAGGTTTTGGCGCAACTTATAAGGCCGAGATCTCTCCTGGAGTGGTTGTGGCTATAAAACGACTCTCTGTGGGCAGGTTTCAAGGTGTCCAACAATTCCGCACCGAAGTCAAAACCCTTGGAAGGCTTAGACATCCAAATCTAGTCACTCTAATTGGTTATCACGCAAGTGAGACTGAAATGTTCCTTATATACAATTTCTTGCCTCGGGGTAATTTGGAGAAATTCATCAGGGAAAGATCGACTAGGGCTATTGATTGGAGAATACTTCACAAGATTGCTTTCGATATTGCTCAAGCCTTGACGTACCTTCATGACGAATGCATTCCTAGAGTGCTCCACAGAGATGTCAAACCGAGCAATATTTTGATAGATGACGATTTCAATGCCTATCTCTCTGATTTCGGATTGGCCCGGCTTCTGGGGACTTCTGAGACTCATGCTACGACAGGTGTGGCCGGAACTTTTGGTTATGTGGCCCCAGAGTATGCAATGACCTGTCGGGTTTCAGATAAGGCAGACGTGTATAGTTATGGGGTGGTGCTTCTCGAGTTGCTTTCCGATAAGAAGGCCTTGGATCCTTCGTTTTCATCTTATGGGAATGGTTTTAACATTGTGGCATTGGCGTGTATGTTATTAAGACAGGGCCGGGCAAAGGAGTTCTTTACTGCTGGGTTGTGGGAGGTGGGCCCACACGATGATTTGGTGGAGATGTTACATTTGGCGGTTGTGTGTACGGTAGATTCTCTCTCTTACCGGCCTACGATGAAGCAGGTTGTTAGGCGCTTAAAGCAGCTTCAACCGCCGTCGTGCTAG 3408 44.28 MGRWSCHLFNNPVSSSLFRKLFLLLCVCSITQIEALTGYSDKSVLLQLKNSLSDESGLLSSWSSNSSDHCSWFGILCDFNSRVISLYILGNGGGEGKKNSSAFSCSDFSIFPLYGLGIRRNCAGSRGKLSGSVSPVISELSELRNLSLPFNGFVGEVPTEIWAMKSLEVLDLEGNSITGILPDKFSGLRNLRVLNLGFNSIQGGIPASLSSCFNLEILNLAGNQFNGTIPGFLSQLKGVYMSFNSFTGSIPSELGDDCGKLEHLDLSGNWLVQGIPSSLGNCSQLQALLLYSNMLEEGIPSEIGKLQKLKVLDISRNSLSGSIPPQLGNCSELSVLVLSNLFQVNNTYGNSPLDGMSNEISTDEYNFFQGEIPEGISILPKLRILWAPRVILEGRFPSNWGRCESLEVINLAQNLLSGELPRGLSQCKKLQFLDLSSNRLSGPLNQDLPVPCMTFSDISGNKMVGPIPVFSKNPCPPVSYSLNKFSFESDHPFSQYLWFFATRARASNKLPTGDGDSLVVFHNFGQNKFSGSLQSLAIAPERLGKQTVYAYLAGGNKLTGPFPRILLENCGGLKALIVNVSNNKISGPIPGEIGEMCASLKILDASENQINGSIPSSFGKLSLDVINLSWNLLQSGIPFSLGRIATLKYLSLAHNNLKGPIPSSLGQLHVLQSLDLSSNSLTGEIPQDVVKLRSLTLLLLNNNKLSGQIPDGLANVFTLSSFNVSFNNLSGSLPSNNNLMKCSSVLGNPLLQPCRMFSLTVPSSDLACSNLSASPSNDPTPSSGNGSGMNSIEIASITSASAIVSVLLALIVLFIYSRKWKPRSKIHGSSKKEVIVFTDIGVQLTFENVVQATNNFNASNCIGSGGFGATYKAEISPGVVVAIKRLSVGRFQGVQQFRTEVKTLGRLRHPNLVTLIGYHASETEMFLIYNFLPRGNLEKFIRERSTRAIDWRILHKIAFDIAQALTYLHDECIPRVLHRDVKPSNILIDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVALACMLLRQGRAKEFFTAGLWEVGPHDDLVEMLHLAVVCTVDSLSYRPTMKQVVRRLKQLQPPSC 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8197882 8201654 + Conep18aG0117400.1 Cone18ag1137 458098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1137 1135 Pfam Protein kinase domain 859 1057 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1137 1135 Gene3D Ribonuclease Inhibitor 38 234 IPR032675 -
Cone18ag1137 1135 Gene3D Ribonuclease Inhibitor 360 487 IPR032675 -
Cone18ag1137 1135 SMART serkin_6 856 1134 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1137 1135 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 820 931 - -
Cone18ag1137 1135 CDD STKc_IRAK 862 1130 - -
Cone18ag1137 1135 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
Cone18ag1137 1135 Gene3D Transferase(Phosphotransferase) domain 1 932 1132 - -
Cone18ag1137 1135 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 517 759 - -
Cone18ag1137 1135 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 362 444 - -
Cone18ag1137 1135 Pfam Leucine rich repeat 646 705 IPR001611 GO:0005515(InterPro)
Cone18ag1137 1135 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515(InterPro)
Cone18ag1137 1135 SUPERFAMILY L domain-like 130 734 - -
Cone18ag1137 1135 Gene3D Phosphorylase Kinase; domain 1 818 931 - -
Cone18ag1137 1135 SUPERFAMILY Protein kinase-like (PK-like) 838 1127 IPR011009 -
Cone18ag1137 1135 SMART LRR_typ_2 164 187 IPR003591 -
Cone18ag1137 1135 SMART LRR_typ_2 258 282 IPR003591 -
Cone18ag1137 1135 SMART LRR_typ_2 668 691 IPR003591 -
Cone18ag1137 1135 SMART LRR_typ_2 188 212 IPR003591 -
Cone18ag1137 1135 SMART LRR_typ_2 233 257 IPR003591 -
Cone18ag1137 1135 SMART LRR_typ_2 403 427 IPR003591 -
Cone18ag1137 1135 SMART LRR_typ_2 692 715 IPR003591 -
Cone18ag1137 1135 SMART LRR_typ_2 306 330 IPR003591 -
Cone18ag1137 1135 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 256 346 - -
Cone18ag1137 1135 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 932 1134 - -
Cone18ag1137 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 976 988 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1137 1135 ProSitePatterns Protein kinases ATP-binding region signature. 862 884 IPR017441 GO:0005524(InterPro)
Cone18ag1137 1135 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515(InterPro)
Cone18ag1137 1135 Pfam Leucine Rich Repeat 429 447 IPR001611 GO:0005515(InterPro)
Cone18ag1137 1135 Pfam Leucine Rich Repeat 599 621 IPR001611 GO:0005515(InterPro)
Cone18ag1137 1135 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Cone18ag1137 1135 Gene3D Ribonuclease Inhibitor 235 359 IPR032675 -
Cone18ag1137 1135 Gene3D Ribonuclease Inhibitor 517 756 IPR032675 -
Cone18ag1137 1135 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 366 1128 IPR051716 -
Cone18ag1137 1135 ProSiteProfiles Protein kinase domain profile. 856 1130 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0906 Cone-Chr13:7982991 Cone18ag1137 Cone-Chr18:8197882 5.01E-267 dispersed
Cone18ag1137 Cone-Chr18:8197882 Cone19ag0902 Cone-Chr19:7030483 8.74E-246 dispersed
Cone11ag0395 Cone-Chr11:1946801 Cone18ag1137 Cone-Chr18:8197882 0 wgd
Cone16ag0635 Cone-Chr16:7938966 Cone18ag1137 Cone-Chr18:8197882 8.69E-58 wgd
Cone18ag1137 Cone-Chr18:8197882 Cone6ag0525 Cone-Chr6:2608907 1.27E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82340 PF02781 G6PD_C 1.60E-114 CL0139 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1137 - - - 0.0