Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1142 ATGCCTAGCCACAAAACCATCAAGTATCTTCTAACAACCACCCTCGCCCACCTCCTCTTCCTTCACTACCTTATCACCACAGCAGCCGCCGACGACAACATCCTCCTCAACTGCGGTTCCTCTGGCGACTCCACTGCCTTAGACACCCGCACCTGGATCGGAGACACTGGCTCAAAATTCCTCTCCCGAAACGGAACACCCTCCTCCACCACCGCCTCACAAGCACTAACTCAAGCCTCCTCCGTCACTCAAATCCCTTTCTCCACCGCCCGCCTCTCCGCCTCTGCCTTCACCTACTCCTTTCCCCTCACTCCCGGCCAAAAGTTCCTCCGCCTCTACTTCTACCCTGCTCCTTACTCCCCCACCTTCTCCCGCCTGAACGCTCTCTTCACCGTCAAAACAGATCGCTTCACCCTCCTCCAGAACTTCAACGCTTCCCTTCACGCCGATTCGTCTAACTCCGCCACTATCTTCAAAGAATACTCCATTAACATTTTCCACCAAATCCTCAACTTAACCTTCACTCCAAACTCCTCTGTTCCCAACTCATACGCTTTCATCAACGGCATAGAAATCGTCTCCATGCCCACAAATCTTTACTACAAAGAATCTATCTTAATCCGACAAGACGGAGCTCCTTATAGTATGAGTGACTATACGGCACTTGAAACATCTTACCGGATTAATATTGGTGGGGCCGCCATATCGCCAGTTAATGATACCGAAATGTTCCGAACATGGTCCTTAGAAACAGAGTACTTAACTTTATTTAAAGAAGATGCTACCCCATATAACAATAGCATTAGCCTTAAGTATACTCCATCAGTTCCGAACTACACCGCACCAAAAGATGTTTATACAACTGCTAGAACTATGGGAAGGAACGGGCCCTTGAACAAGAGCTTCAATCTCACATGGAGCTTCCCTGTAGACGTCGGATTCTCTTACTTGGTCAGGATGCATTTTTGCGAGTTTCAAGTAGAGATTGTTCGAATGGGTCAGAGAGTTTTTAACATCTATCTAGCTAACCAATCTGCCGTGAGAGCTTTTGATGTTTTCCGATCGGCCGGAGGGAGAGAGATTCCATATTTTAGCGACTATTTAGTGCTCTTGCTGAATAGGGGAAGTGAAGAGAAGAGAGTGAATCTCTCTGTCGAGCTTCAACCATATCCAGATAGCACGATAACAGAATATTATGACGCTATTTTGAATGGGATCGAGATTTTCAAACTCAATGATACGACCGGAAATCTCGTCGGAGTGAACCCGGACCCCCTTCCGGCCACCACTAAACAACCTCGTACCGAATCAAATAAGTCGAGGACTAAGTTTCCGGTTGTGATCGGTTCGGTTGTTGGTGGGGTCGGTTTTCTCGCCGTGGTCGGGTTTTTGCTTCTCGGGTTTTTTATTTTCCGGCGACGAGTTGGAAGTTCTAAGAAGCATAAGGGGTCCAGTACTGACGGGACTACTACATTGTGGGGCCCGTTCTCATATTCGACGACCAAGTCAACGAAGACACGTGGGTCGTCGTCTCTACCTTCCGATTTGTGTCGTTACTTTTCATTGGCTGAAATCAAGGCTGCTACTAACGATTTTGATGGGGTGCTCATTGTTGGTGTTGGAGGGTTTGGTGACGTGTACAAAGGGTATGTGAACATGGACGGTAAGACCGTACGGGTCGCAATCAAACGGTTAAAACCCGGTTCGGAACAAGGGGCCCACGAGTTCAAGACCGAGATCGAGATGCTCTCCCAACTCCGACACCTTCATTTGGTCCCTTTGATAGGATATTGCAACGAAGGTGAAGAGATGATCTTGGTTTATGATTACATGGCATGTGGGACCCTCCGAGATCATCTCTACGGTAAAGATAATCCATCCCTTCCGTGGATCCAACGGTTGGAGATTTGTATCGGAGCGGCGCGTGGGCTGCACTACCTTCACACGGGAGCAAAGCACAGGATCATTCACCGTGACATGAAAACAACCAACATTCTATTGGACGAGAAATGGGTGGCCAAGGTTTCGGATTTCGGTTTGTCCAAAGTGGGGCCCACCGACACTTCAAAAACACACGTAAGCACGGTGGTCAAGGGTAGTTTTGGGTATTTGGACCCGGAATACTACCGACGTCAACGACTGACTGAAAAATCCGACGTGTACTCGTTTGGAGTAGTACTATGTGAGGTACTATGTGCTAGACCGCCTGTAATTCGTACCAAGGATAAGGAGCAAGCGATCCTTCCCGCGTGGGTCCAGAGATGCTACGCTCGGAATGCGCTTGATCAGATGGTCGATCTAACAATGAAGGATCAAGTGAGCCCAGCGTGTTTGAGGAAATTCGTGGAAACGGCCGTGAGTTGCGTCAACGATAATGGAACGGAACGGCCGTCCATGAATGACGTGGTGTGGGGGCTCGAGTTCGCATTGCAGCTGCAGCAGAGCACCACCGCTGTAGGAAATTATGGAACTAAAGGTGGGACCCACATTAATGAAGAAGAAGAAAAAAAAGAAGCCGTAATTGTCAGTAGAGAAATAAACGACAGTTGCGAGGAGATGTTTAGCAGCAGTTCGGATACAGGGGTGGGTTCGAATTCAAAAAGCAGTGGAACATTGACGGCAATATCAAGTAATAGTGATAGTAAGAACAAAGAGGATTCAGGTAAGGGTATGTCTGGGTCTATCTTCTCAGAAATCATGAATTCAGGAGGAAGATGA 2718 48.09 MPSHKTIKYLLTTTLAHLLFLHYLITTAAADDNILLNCGSSGDSTALDTRTWIGDTGSKFLSRNGTPSSTTASQALTQASSVTQIPFSTARLSASAFTYSFPLTPGQKFLRLYFYPAPYSPTFSRLNALFTVKTDRFTLLQNFNASLHADSSNSATIFKEYSINIFHQILNLTFTPNSSVPNSYAFINGIEIVSMPTNLYYKESILIRQDGAPYSMSDYTALETSYRINIGGAAISPVNDTEMFRTWSLETEYLTLFKEDATPYNNSISLKYTPSVPNYTAPKDVYTTARTMGRNGPLNKSFNLTWSFPVDVGFSYLVRMHFCEFQVEIVRMGQRVFNIYLANQSAVRAFDVFRSAGGREIPYFSDYLVLLLNRGSEEKRVNLSVELQPYPDSTITEYYDAILNGIEIFKLNDTTGNLVGVNPDPLPATTKQPRTESNKSRTKFPVVIGSVVGGVGFLAVVGFLLLGFFIFRRRVGSSKKHKGSSTDGTTTLWGPFSYSTTKSTKTRGSSSLPSDLCRYFSLAEIKAATNDFDGVLIVGVGGFGDVYKGYVNMDGKTVRVAIKRLKPGSEQGAHEFKTEIEMLSQLRHLHLVPLIGYCNEGEEMILVYDYMACGTLRDHLYGKDNPSLPWIQRLEICIGAARGLHYLHTGAKHRIIHRDMKTTNILLDEKWVAKVSDFGLSKVGPTDTSKTHVSTVVKGSFGYLDPEYYRRQRLTEKSDVYSFGVVLCEVLCARPPVIRTKDKEQAILPAWVQRCYARNALDQMVDLTMKDQVSPACLRKFVETAVSCVNDNGTERPSMNDVVWGLEFALQLQQSTTAVGNYGTKGGTHINEEEEKKEAVIVSREINDSCEEMFSSSSDTGVGSNSKSSGTLTAISSNSDSKNKEDSGKGMSGSIFSEIMNSGGR 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8226328 8229750 + Conep18aG0117900.1 Cone18ag1142 458103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1142 905 Gene3D - 221 412 - -
Cone18ag1142 905 Gene3D - 33 196 - -
Cone18ag1142 905 Pfam Malectin-like domain 36 410 IPR024788 -
Cone18ag1142 905 SMART serkin_6 532 809 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1142 905 Pfam Protein tyrosine and serine/threonine kinase 538 803 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1142 905 FunFam FERONIA receptor-like kinase 33 196 - -
Cone18ag1142 905 Gene3D Transferase(Phosphotransferase) domain 1 611 824 - -
Cone18ag1142 905 MobiDBLite consensus disorder prediction 853 881 - -
Cone18ag1142 905 FunFam Receptor-like protein kinase FERONIA 611 826 - -
Cone18ag1142 905 ProSiteProfiles Protein kinase domain profile. 532 809 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1142 905 PANTHER OS03G0124300 PROTEIN-RELATED 10 467 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Cone18ag1142 905 ProSitePatterns Protein kinases ATP-binding region signature. 538 563 IPR017441 GO:0005524(InterPro)
Cone18ag1142 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1142 905 Gene3D Phosphorylase Kinase; domain 1 496 610 - -
Cone18ag1142 905 FunFam FERONIA receptor-like kinase 220 412 - -
Cone18ag1142 905 SUPERFAMILY Protein kinase-like (PK-like) 507 808 IPR011009 -
Cone18ag1142 905 CDD STKc_IRAK 538 803 - -
Cone18ag1142 905 MobiDBLite consensus disorder prediction 888 905 - -
Cone18ag1142 905 FunFam Receptor-like protein kinase FERONIA 504 610 - -
Cone18ag1142 905 MobiDBLite consensus disorder prediction 853 905 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0362 Cone-Chr11:1773508 Cone18ag1142 Cone-Chr18:8226328 0 dispersed
Cone18ag1142 Cone-Chr18:8226328 Cone19ag1457 Cone-Chr19:9464268 1.28E-257 dispersed
Cone18ag1141 Cone-Chr18:8218344 Cone18ag1142 Cone-Chr18:8226328 3.52E-96 tandem
Cone18ag1142 Cone-Chr18:8226328 Cone18ag1143 Cone-Chr18:8231900 3.49E-265 tandem
Cone11ag0358 Cone-Chr11:1752189 Cone18ag1142 Cone-Chr18:8226328 2.23E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82342 PF02213 GYF 1.20E-09 CL0673 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1142 - - - 0.0