Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone18ag1146 | ATGCTCAAGACCCTTGAAAGGTACCAAAAATGCAGTTATGGTTCTGTGGATCAAGTTAGTAGGCCTGCCAAGGAGCTTGAGAGTAGCTACCGGGAGTACTTGAAATTGAAGGGGAAACTCGAATCCCTCCAACGAACTCAAAGGAACCTTCTTGGAGAAGACTTGGGCCCACTGAATTCAAAGGACCTAGAGCAGCTGGAGCGTCAGCTCGAGTCATCCCTCAAGTTGGTTAGGTCCACTAAGACCCAGTACATGCTTGACCAGCTTACTGAACTTCAAAACAAGGTACATAGTGCAATAATCATGATATATAGTTTAATTCTAGCTGTGCTTCAAATGTTATTTACAATGTGTGTATATATATATATATGCTTGTTAATACAGGAACAGCTGTTGATGTCATCAAATAGAGCTTTGATAATGAAGCTGGATGAGATGAGTTTAAGAAATCAGTATAGGCCAACATGGGAAGGTGGGGAGCAAACCCTGTCACCATATCATGCTGATCAGCATCAGCATCACTATCATCATCAGAATGCTCAAACTCAAGGCTTCTTCCAGCCTCTAGATTGCAATCCAACTCTTCAAATGGGGTAA | 597 | 42.21 | MLKTLERYQKCSYGSVDQVSRPAKELESSYREYLKLKGKLESLQRTQRNLLGEDLGPLNSKDLEQLERQLESSLKLVRSTKTQYMLDQLTELQNKVHSAIIMIYSLILAVLQMLFTMCVYIYICLLIQEQLLMSSNRALIMKLDEMSLRNQYRPTWEGGEQTLSPYHADQHQHHYHHQNAQTQGFFQPLDCNPTLQMG | 198 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 8262260 | 8263864 | + | Conep18aG0118400.1 | Cone18ag1146 | 458107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone18ag1146 | 198 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 179 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Cone18ag1146 | 198 | Pfam | K-box region | 23 | 97 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Cone18ag1146 | 198 | Coils | Coil | 26 | 46 | - | - | |
| Cone18ag1146 | 198 | Coils | Coil | 63 | 83 | - | - | |
| Cone18ag1146 | 198 | ProSiteProfiles | K-box domain profile. | 26 | 149 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone18ag1146 | Cone-Chr18:8262260 | Cone20ag0564 | Cone-Chr20:3151511 | 3.55E-10 | dispersed | |
| Cone2ag0486 | Cone-Chr2:2633642 | Cone18ag1146 | Cone-Chr18:8262260 | 7.11E-63 | transposed | |
| Cone1ag1119 | Cone-Chr1:55564708 | Cone18ag1146 | Cone-Chr18:8262260 | 8.54E-13 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone18ag1146 | K09264 | - | mdm:103404655 | 222.631 |