Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1148 ATGGGTGCAGTTTGCTGCTGTTTATACGATGAAGATTGTGACGATTATGTCAACCCAAACAGCTCTGTGTATCGGAACTGCTTATGTCTTAGTTGCTTTGTCCAACAAATCTCCTTTGTATATACATCTTTATTCAGAAGAGGAGAAACGCATTCCATCGCATCTACCAGTCACAGCACTACATCTATGACATCAACACAATCAAATGGAAACTCTATTATCAATATGTACCATCCTCCTCCAAGGCCATTGCCTTATGATGCTGACTCTAGATACATCCGTTTGGTAAGGGATGGGCTGGTTTCGAGGCGTGAGAAGGGCTCGAGTCATGTTCATGAAGAGTCCGAACCTCTAAGGACCGATTTTGATGTGGATTCACAATCTTTGAGCTCAGTGGAGAAATGGAATGAATCTGCTTGTGAAGATGAGTCTAAGAAGCTCCAGAGTTCTAAGTCCTCAGCTAAGCTCTCTTCTATGGTGAAAAGTGCAAGTGGAGTTGGATTTGTTTATATGTCGAAAGAAGATGAAGATGTTTGCCCAACATGCCTTGAAGAATATACCGAGGAGAATCCAAAGATAATGATGAAATGCTCGCATCATTTTCACCTCGGATGCATCTATGAGTGGATGGAAAGAAGTGAGAACTGCCCGGTTTGTGGCAAGGTGATGGCGTTCGACGAAGCGACTTGA 690 43.04 MGAVCCCLYDEDCDDYVNPNSSVYRNCLCLSCFVQQISFVYTSLFRRGETHSIASTSHSTTSMTSTQSNGNSIINMYHPPPRPLPYDADSRYIRLVRDGLVSRREKGSSHVHEESEPLRTDFDVDSQSLSSVEKWNESACEDESKKLQSSKSSAKLSSMVKSASGVGFVYMSKEDEDVCPTCLEEYTEENPKIMMKCSHHFHLGCIYEWMERSENCPVCGKVMAFDEAT 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8266713 8269253 - Conep18aG0118600.1 Cone18ag1148 458109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1148 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 225 - GO:0004842(PANTHER)
Cone18ag1148 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 226 IPR013083 -
Cone18ag1148 229 MobiDBLite consensus disorder prediction 104 125 - -
Cone18ag1148 229 MobiDBLite consensus disorder prediction 55 75 - -
Cone18ag1148 229 Pfam Ring finger domain 178 219 IPR001841 -
Cone18ag1148 229 ProSiteProfiles Zinc finger RING-type profile. 179 219 IPR001841 -
Cone18ag1148 229 CDD RING-H2_AIRP1-like 175 223 - -
Cone18ag1148 229 SMART ring_2 179 219 IPR001841 -
Cone18ag1148 229 MobiDBLite consensus disorder prediction 104 121 - -
Cone18ag1148 229 SUPERFAMILY RING/U-box 172 225 - -
Cone18ag1148 229 FunFam E3 ubiquitin-protein ligase At3g02290-like 155 226 - -
Cone18ag1148 229 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0522 Cone-Chr16:7231859 Cone18ag1148 Cone-Chr18:8266713 4.28E-108 dispersed
Cone18ag1148 Cone-Chr18:8266713 Cone2ag0482 Cone-Chr2:2619200 6.39E-110 dispersed
Cone11ag0352 Cone-Chr11:1721558 Cone18ag1148 Cone-Chr18:8266713 9.14E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1148 - - - 0.0