Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1202 ATGGCAACAAAAAGGAATGGCGTTGAAGAGGAAGAAGTTTCAAAGATTGAAGCCGGAATCAACATCACCTCAAACTCTTCCAGTACTCAAAAACCCAACTCGTGTTCATCAACACCAGCTGTGATAGCTGCTCAAAGGGTGCTTGCTGAGTTTATTGGCACATACTTCGTGATTTTTGCTGGATGTGGATCAGTGGCTGTGAACAAGATATATGGATCGGTCACATTTCCCGGTATCTGTCTGACTTGGGGTCTCATCGTAACGGTTATGATATACACGGTCGGTCATATTTCCGGTGCCCACTTTAATCCCGCCGTCACGATCACTAATGCCATTTTCCGTCGCTTTCCGTGGTGGGAGGTTCCCCCATACATAGCAGCACAGCTCTTGGGATCGATTCTTGCAAGCGGGACAATAGCTCTAGTTCTTGATGTAACTCCGACATCTTTCTTCGGAACTGTTCCTGTCGGATCCGACACCCAATCTTTCGTCGTTGAGGTCATCATCACCTTCCTCTTGATGTTCGTTATTTCTGGATGTTGCACTGACGATAGAGCAATTGGACATCTAGGAGGGATTGCAGTTGGAATGACCATACTTTTGAACGTTTTCATTGGCGGGCCGATTTCAGGAGCTTCGATGAATCCGGCAAGGAGCATAGGACCAGCATTGGTGAAGCATGTTTACAAAGGACTTTGGGTTTATATAGTAGGCCCGATTGTCGGAGCTATTGCCGGAGCATTTGTCTACAACTTCTTGAGATTCACTGATAAGCCTCTTCGTGATTTAACTCGAAGCAGCTCCTTCCTCATTGGTAGAACAAGATAA 828 46.14 MATKRNGVEEEEVSKIEAGINITSNSSSTQKPNSCSSTPAVIAAQRVLAEFIGTYFVIFAGCGSVAVNKIYGSVTFPGICLTWGLIVTVMIYTVGHISGAHFNPAVTITNAIFRRFPWWEVPPYIAAQLLGSILASGTIALVLDVTPTSFFGTVPVGSDTQSFVVEVIITFLLMFVISGCCTDDRAIGHLGGIAVGMTILLNVFIGGPISGASMNPARSIGPALVKHVYKGLWVYIVGPIVGAIAGAFVYNFLRFTDKPLRDLTRSSSFLIGRTR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8571293 8572662 - Conep18aG0124200.1 Cone18ag1202 458163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1202 275 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1202 275 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1202 275 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1202 275 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1202 275 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1202 275 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1202 275 Pfam Major intrinsic protein 44 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1202 275 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Cone18ag1202 275 PANTHER AQUAPORIN NIP2-1 26 258 IPR034294 -
Cone18ag1202 275 CDD MIP 45 253 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1202 275 NCBIfam MIP family channel protein 49 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag1202 275 SUPERFAMILY Aquaporin-like 45 260 IPR023271 -
Cone18ag1202 275 Gene3D Glycerol uptake facilitator protein. 3 262 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1202 Cone-Chr18:8571293 Cone9ag0941 Cone-Chr9:4650979 8.95E-101 dispersed
Cone18ag1202 Cone-Chr18:8571293 Cone6ag0938 Cone-Chr6:4829715 3.34E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1202 K09874 - csv:101215315 380.563