Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone18ag1212 | ATGGCATCAGCACAACCCGCGAAGCTGAGATGGGGCGAGCTGGATGAGGATGATGGAGAGGACTTGGATTTTCTCCTGCCGCCGAAGCAGGTAATCGGACCCGATCAGAACGGGATCAAGAAGGTAATCGAATACAAATTCAACGATGATGGCAATAAGGTCAAGGTCACTACGATCTCTCGCACTCGCAAGCTTGCAAACGCTCGCCTGAGCAAGCGCGCTTTGGAGCGCCGATCTTGGCCCAAGTTTGGCGATGCTGTGCACAAAGATGTCGGTAGCAGGCTAACCATGGTTTCTACTGAAGAAATCCTCCTCGAACGCCCTAGGGCTCCTGGTAGCAAAGCGGAAGAGCCAAAGGCAGCAGGGGACCCACTGGCCCAAATGGGGAAGGGAGGTGCTGTTCTCATGGTCTGTAGGACTTGCGGTAAAAAGGGAGATCACTGGACCTCAAGATGTCCTTACAAGGATCTGGCCCAACCCTCTGAGGGATTCGTCGTTGACAAGCCGCCTTCTTCAGAGACTACTGCTGCAGCACCTGGTGGGTCTGCCAAGTCAACATATGTTCCCCCGGGCATGAGAGCCGGAGCAGAGAGGGGTGCTGGATCCGACATGAGACGCAGAAATGATGAGAACTCTGTTAGAGTGACTAATCTCTCAGAGGACACGAGGGAGCCGGACCTGCTCGAGCTTTTCAGACCGTTTGGTGCAGTGAGCCGTGTCTATGTTGCTGTTGACCAGAAGACGGGTATGAGCCGAGGGTTCGGATTTGTCAACTTTGTGAACAGAGAAGATGCCCAGAGAGCCATCAACAAGCTCAATGGCTATGGTTATGACAATCTCATCCTTAGAGTTGAATGGGCCACCCCTAGGGCAACTTAA | 879 | 53.36 | MASAQPAKLRWGELDEDDGEDLDFLLPPKQVIGPDQNGIKKVIEYKFNDDGNKVKVTTISRTRKLANARLSKRALERRSWPKFGDAVHKDVGSRLTMVSTEEILLERPRAPGSKAEEPKAAGDPLAQMGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAQPSEGFVVDKPPSSETTAAAPGGSAKSTYVPPGMRAGAERGAGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 8630108 | 8632108 | - | Conep18aG0125200.1 | Cone18ag1212 | 458173 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone18ag1212 | 292 | PIRSF | Transl_init_eIF-3_RNA-bind | 1 | 292 | IPR017334 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
| Cone18ag1212 | 292 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 35 | 287 | - | - | |
| Cone18ag1212 | 292 | CDD | eIF3G | 37 | 156 | IPR024675 | - | |
| Cone18ag1212 | 292 | MobiDBLite | consensus disorder prediction | 163 | 213 | - | - | |
| Cone18ag1212 | 292 | Pfam | Eukaryotic translation initiation factor 3 subunit G | 30 | 157 | IPR024675 | - | |
| Cone18ag1212 | 292 | Hamap | Eukaryotic translation initiation factor 3 subunit G [EIF3G]. | 8 | 291 | IPR017334 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
| Cone18ag1212 | 292 | CDD | RRM_eIF3G_like | 212 | 287 | IPR034240 | - | |
| Cone18ag1212 | 292 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 211 | 289 | IPR000504 | GO:0003723(InterPro) | |
| Cone18ag1212 | 292 | Gene3D | - | 169 | 292 | IPR012677 | - | |
| Cone18ag1212 | 292 | SMART | rrm1_1 | 212 | 285 | IPR000504 | GO:0003723(InterPro) | |
| Cone18ag1212 | 292 | FunFam | Eukaryotic translation initiation factor 3 subunit G | 174 | 292 | - | - | |
| Cone18ag1212 | 292 | SUPERFAMILY | RNA-binding domain, RBD | 197 | 290 | IPR035979 | GO:0003676(InterPro) | |
| Cone18ag1212 | 292 | Pfam | RNA recognition motif | 213 | 279 | IPR000504 | GO:0003723(InterPro) | |
| Cone18ag1212 | 292 | MobiDBLite | consensus disorder prediction | 199 | 213 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag0983 | Cone-Chr14:8104536 | Cone18ag1212 | Cone-Chr18:8630108 | 1.17E-08 | dispersed | |
| Cone18ag1212 | Cone-Chr18:8630108 | Cone20ag1350 | Cone-Chr20:8674351 | 6.06E-11 | dispersed | |
| Cone4ag0705 | Cone-Chr4:3690151 | Cone18ag1212 | Cone-Chr18:8630108 | 3.37E-140 | transposed | |
| Cone11ag0276 | Cone-Chr11:1337952 | Cone18ag1212 | Cone-Chr18:8630108 | 3.58E-202 | wgd | |
| Cone18ag1212 | Cone-Chr18:8630108 | Cone6ag0518 | Cone-Chr6:2587301 | 2.14E-09 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone18ag1212 | K03248 | - | csv:101212619 | 495.738 |