Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1212 ATGGCATCAGCACAACCCGCGAAGCTGAGATGGGGCGAGCTGGATGAGGATGATGGAGAGGACTTGGATTTTCTCCTGCCGCCGAAGCAGGTAATCGGACCCGATCAGAACGGGATCAAGAAGGTAATCGAATACAAATTCAACGATGATGGCAATAAGGTCAAGGTCACTACGATCTCTCGCACTCGCAAGCTTGCAAACGCTCGCCTGAGCAAGCGCGCTTTGGAGCGCCGATCTTGGCCCAAGTTTGGCGATGCTGTGCACAAAGATGTCGGTAGCAGGCTAACCATGGTTTCTACTGAAGAAATCCTCCTCGAACGCCCTAGGGCTCCTGGTAGCAAAGCGGAAGAGCCAAAGGCAGCAGGGGACCCACTGGCCCAAATGGGGAAGGGAGGTGCTGTTCTCATGGTCTGTAGGACTTGCGGTAAAAAGGGAGATCACTGGACCTCAAGATGTCCTTACAAGGATCTGGCCCAACCCTCTGAGGGATTCGTCGTTGACAAGCCGCCTTCTTCAGAGACTACTGCTGCAGCACCTGGTGGGTCTGCCAAGTCAACATATGTTCCCCCGGGCATGAGAGCCGGAGCAGAGAGGGGTGCTGGATCCGACATGAGACGCAGAAATGATGAGAACTCTGTTAGAGTGACTAATCTCTCAGAGGACACGAGGGAGCCGGACCTGCTCGAGCTTTTCAGACCGTTTGGTGCAGTGAGCCGTGTCTATGTTGCTGTTGACCAGAAGACGGGTATGAGCCGAGGGTTCGGATTTGTCAACTTTGTGAACAGAGAAGATGCCCAGAGAGCCATCAACAAGCTCAATGGCTATGGTTATGACAATCTCATCCTTAGAGTTGAATGGGCCACCCCTAGGGCAACTTAA 879 53.36 MASAQPAKLRWGELDEDDGEDLDFLLPPKQVIGPDQNGIKKVIEYKFNDDGNKVKVTTISRTRKLANARLSKRALERRSWPKFGDAVHKDVGSRLTMVSTEEILLERPRAPGSKAEEPKAAGDPLAQMGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAQPSEGFVVDKPPSSETTAAAPGGSAKSTYVPPGMRAGAERGAGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT 292
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 8630108 8632108 - Conep18aG0125200.1 Cone18ag1212 458173
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1212 292 PIRSF Transl_init_eIF-3_RNA-bind 1 292 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cone18ag1212 292 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 35 287 - -
Cone18ag1212 292 CDD eIF3G 37 156 IPR024675 -
Cone18ag1212 292 MobiDBLite consensus disorder prediction 163 213 - -
Cone18ag1212 292 Pfam Eukaryotic translation initiation factor 3 subunit G 30 157 IPR024675 -
Cone18ag1212 292 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 8 291 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cone18ag1212 292 CDD RRM_eIF3G_like 212 287 IPR034240 -
Cone18ag1212 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723(InterPro)
Cone18ag1212 292 Gene3D - 169 292 IPR012677 -
Cone18ag1212 292 SMART rrm1_1 212 285 IPR000504 GO:0003723(InterPro)
Cone18ag1212 292 FunFam Eukaryotic translation initiation factor 3 subunit G 174 292 - -
Cone18ag1212 292 SUPERFAMILY RNA-binding domain, RBD 197 290 IPR035979 GO:0003676(InterPro)
Cone18ag1212 292 Pfam RNA recognition motif 213 279 IPR000504 GO:0003723(InterPro)
Cone18ag1212 292 MobiDBLite consensus disorder prediction 199 213 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0983 Cone-Chr14:8104536 Cone18ag1212 Cone-Chr18:8630108 1.17E-08 dispersed
Cone18ag1212 Cone-Chr18:8630108 Cone20ag1350 Cone-Chr20:8674351 6.06E-11 dispersed
Cone4ag0705 Cone-Chr4:3690151 Cone18ag1212 Cone-Chr18:8630108 3.37E-140 transposed
Cone11ag0276 Cone-Chr11:1337952 Cone18ag1212 Cone-Chr18:8630108 3.58E-202 wgd
Cone18ag1212 Cone-Chr18:8630108 Cone6ag0518 Cone-Chr6:2587301 2.14E-09 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1212 K03248 - csv:101212619 495.738