Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone18ag1228 | ATGATGGAGACGACGGAGAACGGCGAGGGTGAGTATGAAGTAGACATCAGCCTGAAAGATCGAATGAAATCGTCGCGTGGAAGCATATTCAATCTGATTAGGAACGAGTTTAGGCACGAAAACGTCATTAATGGCATCAAATCTCTGTCCAGAGGTTTCGTCATCCATCCAGAAAACAGGTGGTACAAAGCGTGGACAAATTTCATACTGGTCTGGGCTCTATACTCATCCATCTTCACACCTATGGAGTTTGGCTTCTTCAGGGGATTGCCAGAGCACCTCTTCATACTCGACATTGCAGGACAGATTGCTTTTCTCCTCGACATCATCTTGCAGTTCTTTGTTGCCTACAGAGACAGTCAAACCTACCGTATGGTTTATAAGCGCACCCCTATTGCTCTCAGATACTTGAAATCCAGTTTTTTGGTTGATTTCCTTGGCTGTATGCCTTGGGATATCATCTATAAGGCTTCTGGCAAAAAAGAGGAATTGAGGTACCTTCTTTGGATCAGATTGAGTAGGGTGCGTAAAGTGAACAATTTCTTTCAGAAGTTGGAGAAAGACATACGCATCAATTACTTGTTTACTAGGATCGTAAAGCTTATTGCTGTTGAGATCTACTGTAGCCATACAGCTGCCTGTATTTTTTACTATCTGGCTACAACTATGCCTGCTTCCAAAGAGGGATATACATGGATTGGAAGTTTAAAATTGGGCGATTATGCTTACTCTAGTTTCAGAGAGATTGATATATGGAAACGATACATAACGTCTTTATATTTTGCTGTTGTCACTATGGCCACTGTTGGGTATGGAGACATACATGCAGTCAATATAAGGGAGATGATCTTCATTATGATATATGTCTCTTTTGACATGATTCTCGGGGCTTATTTGATCGGTAACATGACGGCATTGATTGTAAAAGGATCAAAGACAGAAAAATTCAGGGACAAAATGACAGACCTCATCAGGTATATGAACAGAAATAGACTTGGAAGTGACATCCGTAATCAGGTCAAAGGCCATGTACGTTTGCAGTATGAAAGTAGCTACACTGATCCTGCTGTTCTGCAAGACCTTCCCATTTCTATTCGTGCCAAGATTTCAAGAACTTTGTACTTTCCCTGTGTTGAGAGCGTTGCGCTTTTTAAGGGATGCTCATCTGAATTTATCAATCAGATAGTGAGTAAACTGCATGAAGAGTTTTTTCTTCCTGGAGAAGTAGTTATGGAGCAGGGAATTGTAGTGGATCAACTTTATTTTGTCTGTCATGGTATCCTGGAGGAAGTGGGAATCGGTGAGGATGGACTAGAAGAGACTGTTTCGCTACTAGAACCCGAAAGCTCATTTGGAGAGTTTTCTATACTTTGCAATATTCCTCAGCCTTATACAGTTCGAGTTTGTGAATTATGTCGGCTTCTACGGCTCGATAAACAGTCTTTCACAAACATTCTCGAGATATTTTTCTCCGATGGTCGTAAAATTTTGAATAACCTTCTGGAGGGAAAAGAATCTAATGTTCGAATAAAGCAACTGGAATCCGATATCACATTTCATATCTCCAAGAAAGAAGCTGAACTTTCTTTGAAGCTAAATAGTGCAGCCTATGATGGGGACTTATACCAGCTGAAAAATCTAATCCGAGCTGGAGCTGATCCAAACAAGACAGACTATGATGGAAGGTCACCATTGCATCTTGCGGCATCAAGAGGACATGAAGATATTACACTTTTCCTCATCCAGGAAGGTGTAGACACCGATGCTAAAGATAATTTTGGAACCACGCCATTACTAGAAGCCATAAAAAATGGGCACGACCGAGTTGCCTCTTTGCTTGTAAACCAAGGCGCCACTTTGAAGATAGAAAATCCAGGTAGCTTTCTATGTACGGCAGTTGCAATGGGCGATTCCGATTTCGTTAGAAGACTACTGCCAAATGGGATCGATCCAAACTCCAAAGATTACGATCACCGAACCCCGCTTCACATAGCCGTGTCCGAAGGATTCTACTTGATGGCTAAACTGCTCCTAGAAGCTGGAGCCAGTGTTTTCTCAGAGGACAGAAGGGGAAACACCCCTTTTGATGAAAGTCAAATGTCCGCAAACAAGAATCTGAGGAAGCTTTTAGAGAAGTGGAAGGCTATTCAGTTATCAGAATTCCCAAACCGCCACCCTGAAATACCCGATAGAAAACACTCAAGGAAATGCACAGTGTTTCCTTTCCAACCATGGGAAGCTTATAAAGAAGTAGAAGGTAGAAGAAGATCTGGGATTGTGATGTGGGTCCCACGTACAATTGAAGAGCTTATCAGAAAAGCATCTGAGCAGCTTGAAATTCCAAGCGATTCCTCTTGTGTAGTATTATCAGAAGATGGAGGTAAAATTTGTGATGTAGATTTGATCATTGATGGCCAGAAGCTGTATCTGGTCAATGAAACACTATAA | 2448 | 41.63 | MMETTENGEGEYEVDISLKDRMKSSRGSIFNLIRNEFRHENVINGIKSLSRGFVIHPENRWYKAWTNFILVWALYSSIFTPMEFGFFRGLPEHLFILDIAGQIAFLLDIILQFFVAYRDSQTYRMVYKRTPIALRYLKSSFLVDFLGCMPWDIIYKASGKKEELRYLLWIRLSRVRKVNNFFQKLEKDIRINYLFTRIVKLIAVEIYCSHTAACIFYYLATTMPASKEGYTWIGSLKLGDYAYSSFREIDIWKRYITSLYFAVVTMATVGYGDIHAVNIREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLIRYMNRNRLGSDIRNQVKGHVRLQYESSYTDPAVLQDLPISIRAKISRTLYFPCVESVALFKGCSSEFINQIVSKLHEEFFLPGEVVMEQGIVVDQLYFVCHGILEEVGIGEDGLEETVSLLEPESSFGEFSILCNIPQPYTVRVCELCRLLRLDKQSFTNILEIFFSDGRKILNNLLEGKESNVRIKQLESDITFHISKKEAELSLKLNSAAYDGDLYQLKNLIRAGADPNKTDYDGRSPLHLAASRGHEDITLFLIQEGVDTDAKDNFGTTPLLEAIKNGHDRVASLLVNQGATLKIENPGSFLCTAVAMGDSDFVRRLLPNGIDPNSKDYDHRTPLHIAVSEGFYLMAKLLLEAGASVFSEDRRGNTPFDESQMSANKNLRKLLEKWKAIQLSEFPNRHPEIPDRKHSRKCTVFPFQPWEAYKEVEGRRRSGIVMWVPRTIEELIRKASEQLEIPSDSSCVVLSEDGGKICDVDLIIDGQKLYLVNETL | 815 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 8724053 | 8728886 | + | Conep18aG0126800.1 | Cone18ag1228 | 458189 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone18ag1228 | 815 | ProSiteProfiles | Ankyrin repeat profile. | 593 | 625 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | ProSiteProfiles | Ankyrin repeat region circular profile. | 560 | 592 | - | - | |
| Cone18ag1228 | 815 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 383 | 503 | IPR000595 | - | |
| Cone18ag1228 | 815 | Gene3D | - | 517 | 625 | IPR036770 | - | |
| Cone18ag1228 | 815 | SMART | ANK_2a | 657 | 686 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | SMART | ANK_2a | 527 | 556 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | SMART | ANK_2a | 593 | 622 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | SMART | ANK_2a | 560 | 589 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | SMART | ANK_2a | 624 | 653 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | Gene3D | - | 64 | 309 | - | - | |
| Cone18ag1228 | 815 | ProSiteProfiles | Ankyrin repeat region circular profile. | 593 | 624 | - | - | |
| Cone18ag1228 | 815 | Pfam | KHA, dimerisation domain of potassium ion channel | 735 | 810 | IPR021789 | - | |
| Cone18ag1228 | 815 | Gene3D | - | 626 | 720 | IPR036770 | - | |
| Cone18ag1228 | 815 | ProSiteProfiles | Ankyrin repeat profile. | 657 | 689 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | CDD | CAP_ED | 383 | 497 | IPR000595 | - | |
| Cone18ag1228 | 815 | Pfam | Cyclic nucleotide-binding domain | 403 | 487 | IPR000595 | - | |
| Cone18ag1228 | 815 | PRINTS | EAG/ELK/ERG potassium channel family signature | 207 | 217 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cone18ag1228 | 815 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cone18ag1228 | 815 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cone18ag1228 | 815 | PRINTS | EAG/ELK/ERG potassium channel family signature | 255 | 272 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cone18ag1228 | 815 | PRINTS | EAG/ELK/ERG potassium channel family signature | 299 | 308 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cone18ag1228 | 815 | Gene3D | Helix hairpin bin | 310 | 366 | - | - | |
| Cone18ag1228 | 815 | Gene3D | Jelly Rolls | 367 | 507 | IPR014710 | - | |
| Cone18ag1228 | 815 | PRINTS | Ankyrin repeat signature | 673 | 687 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | PRINTS | Ankyrin repeat signature | 561 | 576 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | PANTHER | POTASSIUM CHANNEL AKT1 | 42 | 810 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Cone18ag1228 | 815 | ProSiteProfiles | Ankyrin repeat profile. | 560 | 592 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | ProSiteProfiles | KHA domain profile. | 736 | 815 | IPR021789 | - | |
| Cone18ag1228 | 815 | SMART | cnmp_10 | 383 | 501 | IPR000595 | - | |
| Cone18ag1228 | 815 | Pfam | Ankyrin repeats (3 copies) | 630 | 703 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | Pfam | Ankyrin repeats (3 copies) | 533 | 622 | IPR002110 | GO:0005515(InterPro) | |
| Cone18ag1228 | 815 | FunFam | Potassium channel SKOR | 63 | 308 | - | - | |
| Cone18ag1228 | 815 | FunFam | Potassium channel KAT2 | 371 | 508 | - | - | |
| Cone18ag1228 | 815 | SUPERFAMILY | Ankyrin repeat | 517 | 712 | IPR036770 | - | |
| Cone18ag1228 | 815 | SUPERFAMILY | cAMP-binding domain-like | 311 | 501 | IPR018490 | - | |
| Cone18ag1228 | 815 | ProSiteProfiles | Ankyrin repeat region circular profile. | 657 | 689 | - | - | |
| Cone18ag1228 | 815 | Pfam | Ion transport protein | 62 | 312 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone18ag1228 | 815 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 308 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone18ag1228 | Cone-Chr18:8724053 | Cone7ag0655 | Cone-Chr7:3406157 | 1.28E-99 | dispersed | |
| Cone11ag0257 | Cone-Chr11:1243119 | Cone18ag1228 | Cone-Chr18:8724053 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone18ag1228 | K21867 | - | cit:102608594 | 1264.6 |