Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag1238 | ATGCCCTTGGAAGGGATTTTCGTGGAATCCTCATCGAGAACAAACCGGCCAGTAACCGATCTTTCTCTTCATATTAGCCCTCCAAATACTACCTCCTCCTCATCTTCTTCCTCTTCCTCTTCCTCTTCTTCCACTTCCTCTATATATAATGAACTAGCAGACACGACGTTTGAATTAAGAATCCCTAGCTCCATATCCCAACTAGCATCGATTTGCCATACCGAGCTTTCTCTCGGCCGGGGGAATAGTTTCGCTAACTACCATTCCGGGCCACACAACAGCAACAATTACAAAAACCCTACTTATCATCATCATCATCATCAACATCAAAATTTTCCTCCCGGTCACATCGATCTGGATCAAATAACAGGCAGTGATGGTGGCCGCGGCGGCAGTAGTGGTTGTGGTTTGATCAGGCCGATTAAAGGGATCCCAGTGTATCACAACCGTCCGTTGCCGTTCTTACCAATAGATCAGAACCACACGATCGGTACAAGATCATCCTCGTCATCGGATCATCAGCAAAAGATGCTATCATGCTTCTATGATTCCTCTAACAATAGTAACAATAATTACCCACCTTATAACTATAATGTTCATGGTGGTTATAACCATCACGGAGGAGGTCTAGATCATCCAGCCATCATGTCAATCTTAAGTAACAGGCCGAGCAGCACTACTAATCGCACCGGATTCGGGCCGGGTCCATTAACAGCAGCTAGCAGACCGATTACTAACAACAACAACATTAACGAGCTCATGTCGACGCATCAACATCATCACGACCAATACCATCATGGAGGGTTGATGATGAGATCTAGATTCGTTCCGAAGCTTCCCGCGAAGAGAAGTATGCGGGCGCCGAGGATGCGATGGACTAGTACCCTTCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGAGGGCATGAAAGAGCTACTCCCAAGTCAGTTCTTGAGCTGATGGATGTCAAGGATCTCACTCTTGCTCATGTCAAGAGCCATTTACAGATGTATAGGACTGTAAAGACTACTGACAAGCCTGCTGCCTCCTCAGGTCAGTCAGACATGTCCGGAGAAGATGATCGGATGTCTCCGGCTGGGAACTCGTGCGATCAAAATGGGTCATTAACAGAAAGTACTACGGATTATCAAAGTGTGCAGAAGGATATGGACTACGCTAATTCCTCCACCCTTTGGTCTAATTCTTCAAGTTGTAGAGACACGTTGCCACGTAGCCACAGCTCCAATGACGTGGATGGACTGAGACTAGCATCTAATCTTCAGTTGCAGCACAAATATGGGCACCTAATTATTGAGGAATGCGATCCAAATATCTTCAAGAATTATTTAGGATCTGATTCATCAGACCAGTGCAAGAAACCAAGCTTGGAGTTCACTTTAGGAAGACCAGACTGGCATGGAAAAGAACACGACTGA | 1440 | 45.69 | MPLEGIFVESSSRTNRPVTDLSLHISPPNTTSSSSSSSSSSSSSTSSIYNELADTTFELRIPSSISQLASICHTELSLGRGNSFANYHSGPHNSNNYKNPTYHHHHHQHQNFPPGHIDLDQITGSDGGRGGSSGCGLIRPIKGIPVYHNRPLPFLPIDQNHTIGTRSSSSSDHQQKMLSCFYDSSNNSNNNYPPYNYNVHGGYNHHGGGLDHPAIMSILSNRPSSTTNRTGFGPGPLTAASRPITNNNNINELMSTHQHHHDQYHHGGLMMRSRFVPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDMSGEDDRMSPAGNSCDQNGSLTESTTDYQSVQKDMDYANSSTLWSNSSSCRDTLPRSHSSNDVDGLRLASNLQLQHKYGHLIIEECDPNIFKNYLGSDSSDQCKKPSLEFTLGRPDWHGKEHD | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8793807 | 8798217 | + | Conep18aG0127800.1 | Cone18ag1238 | 458199 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag1238 | 479 | MobiDBLite | consensus disorder prediction | 342 | 359 | - | - | |
Cone18ag1238 | 479 | MobiDBLite | consensus disorder prediction | 367 | 381 | - | - | |
Cone18ag1238 | 479 | MobiDBLite | consensus disorder prediction | 8 | 46 | - | - | |
Cone18ag1238 | 479 | MobiDBLite | consensus disorder prediction | 87 | 134 | - | - | |
Cone18ag1238 | 479 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 288 | 341 | IPR006447 | GO:0003677(InterPro) | |
Cone18ag1238 | 479 | MobiDBLite | consensus disorder prediction | 342 | 381 | - | - | |
Cone18ag1238 | 479 | Gene3D | - | 287 | 344 | - | - | |
Cone18ag1238 | 479 | FunFam | Myb family transcription factor | 286 | 344 | - | - | |
Cone18ag1238 | 479 | Pfam | Myb-like DNA-binding domain | 289 | 340 | IPR001005 | - | |
Cone18ag1238 | 479 | SUPERFAMILY | Homeodomain-like | 285 | 341 | IPR009057 | - | |
Cone18ag1238 | 479 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cone18ag1238 | 479 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 13 | 478 | IPR044847 | GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0486 | Cone-Chr12:3225338 | Cone18ag1238 | Cone-Chr18:8793807 | 1.22E-45 | dispersed | |
Cone18ag1238 | Cone-Chr18:8793807 | Cone8ag0489 | Cone-Chr8:3447685 | 3.76E-42 | dispersed | |
Cone11ag0249 | Cone-Chr11:1183604 | Cone18ag1238 | Cone-Chr18:8793807 | 6.76E-262 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45234 | PF00575 | S1 | 5.60E-18 | CL0021 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag1238 | - | - | - | 0.0 |