Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1238 ATGCCCTTGGAAGGGATTTTCGTGGAATCCTCATCGAGAACAAACCGGCCAGTAACCGATCTTTCTCTTCATATTAGCCCTCCAAATACTACCTCCTCCTCATCTTCTTCCTCTTCCTCTTCCTCTTCTTCCACTTCCTCTATATATAATGAACTAGCAGACACGACGTTTGAATTAAGAATCCCTAGCTCCATATCCCAACTAGCATCGATTTGCCATACCGAGCTTTCTCTCGGCCGGGGGAATAGTTTCGCTAACTACCATTCCGGGCCACACAACAGCAACAATTACAAAAACCCTACTTATCATCATCATCATCATCAACATCAAAATTTTCCTCCCGGTCACATCGATCTGGATCAAATAACAGGCAGTGATGGTGGCCGCGGCGGCAGTAGTGGTTGTGGTTTGATCAGGCCGATTAAAGGGATCCCAGTGTATCACAACCGTCCGTTGCCGTTCTTACCAATAGATCAGAACCACACGATCGGTACAAGATCATCCTCGTCATCGGATCATCAGCAAAAGATGCTATCATGCTTCTATGATTCCTCTAACAATAGTAACAATAATTACCCACCTTATAACTATAATGTTCATGGTGGTTATAACCATCACGGAGGAGGTCTAGATCATCCAGCCATCATGTCAATCTTAAGTAACAGGCCGAGCAGCACTACTAATCGCACCGGATTCGGGCCGGGTCCATTAACAGCAGCTAGCAGACCGATTACTAACAACAACAACATTAACGAGCTCATGTCGACGCATCAACATCATCACGACCAATACCATCATGGAGGGTTGATGATGAGATCTAGATTCGTTCCGAAGCTTCCCGCGAAGAGAAGTATGCGGGCGCCGAGGATGCGATGGACTAGTACCCTTCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGAGGGCATGAAAGAGCTACTCCCAAGTCAGTTCTTGAGCTGATGGATGTCAAGGATCTCACTCTTGCTCATGTCAAGAGCCATTTACAGATGTATAGGACTGTAAAGACTACTGACAAGCCTGCTGCCTCCTCAGGTCAGTCAGACATGTCCGGAGAAGATGATCGGATGTCTCCGGCTGGGAACTCGTGCGATCAAAATGGGTCATTAACAGAAAGTACTACGGATTATCAAAGTGTGCAGAAGGATATGGACTACGCTAATTCCTCCACCCTTTGGTCTAATTCTTCAAGTTGTAGAGACACGTTGCCACGTAGCCACAGCTCCAATGACGTGGATGGACTGAGACTAGCATCTAATCTTCAGTTGCAGCACAAATATGGGCACCTAATTATTGAGGAATGCGATCCAAATATCTTCAAGAATTATTTAGGATCTGATTCATCAGACCAGTGCAAGAAACCAAGCTTGGAGTTCACTTTAGGAAGACCAGACTGGCATGGAAAAGAACACGACTGA 1440 45.69 MPLEGIFVESSSRTNRPVTDLSLHISPPNTTSSSSSSSSSSSSSTSSIYNELADTTFELRIPSSISQLASICHTELSLGRGNSFANYHSGPHNSNNYKNPTYHHHHHQHQNFPPGHIDLDQITGSDGGRGGSSGCGLIRPIKGIPVYHNRPLPFLPIDQNHTIGTRSSSSSDHQQKMLSCFYDSSNNSNNNYPPYNYNVHGGYNHHGGGLDHPAIMSILSNRPSSTTNRTGFGPGPLTAASRPITNNNNINELMSTHQHHHDQYHHGGLMMRSRFVPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDMSGEDDRMSPAGNSCDQNGSLTESTTDYQSVQKDMDYANSSTLWSNSSSCRDTLPRSHSSNDVDGLRLASNLQLQHKYGHLIIEECDPNIFKNYLGSDSSDQCKKPSLEFTLGRPDWHGKEHD 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8793807 8798217 + Conep18aG0127800.1 Cone18ag1238 458199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1238 479 MobiDBLite consensus disorder prediction 342 359 - -
Cone18ag1238 479 MobiDBLite consensus disorder prediction 367 381 - -
Cone18ag1238 479 MobiDBLite consensus disorder prediction 8 46 - -
Cone18ag1238 479 MobiDBLite consensus disorder prediction 87 134 - -
Cone18ag1238 479 NCBIfam myb-like DNA-binding domain, SHAQKYF class 288 341 IPR006447 GO:0003677(InterPro)
Cone18ag1238 479 MobiDBLite consensus disorder prediction 342 381 - -
Cone18ag1238 479 Gene3D - 287 344 - -
Cone18ag1238 479 FunFam Myb family transcription factor 286 344 - -
Cone18ag1238 479 Pfam Myb-like DNA-binding domain 289 340 IPR001005 -
Cone18ag1238 479 SUPERFAMILY Homeodomain-like 285 341 IPR009057 -
Cone18ag1238 479 MobiDBLite consensus disorder prediction 1 46 - -
Cone18ag1238 479 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 13 478 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0486 Cone-Chr12:3225338 Cone18ag1238 Cone-Chr18:8793807 1.22E-45 dispersed
Cone18ag1238 Cone-Chr18:8793807 Cone8ag0489 Cone-Chr8:3447685 3.76E-42 dispersed
Cone11ag0249 Cone-Chr11:1183604 Cone18ag1238 Cone-Chr18:8793807 6.76E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45234 PF00575 S1 5.60E-18 CL0021 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1238 - - - 0.0