Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1245 ATGGTTCTCACCAAGATCGAATCGTTGGAAACCGATGCATCCATACACTCGACTTTCGGATCCCGATATGTTAGAACGGGTCTTCCCAGGTTCAAAATGCCGGAAAATTCGATCCCGAAAGAGGCAGCATACCAGATCATCAACGACGAGCTGATGCTCGACGGCAATCCGCGGCTCAACTTGGCTTCCTTTGTGACGACGTGGATGGAGCCGGAATGTGATAAGCTCATGATGGCTTCTGTCAACAAGAACTACGTTGACATGGATGAGTATCCTGTCACAACTGAGTTACAGAATCGGTGTGTGAACATGATAGCACATCTATTCAATGCCCCACTAGGAGAGTCCGAGACGGCAGTTGGGGTGGGGACGGTGGGGTCCTCCGAGGCTATCATGTTGGCTGGCTTAGCTTTCAAGCGCAAGTGGCAGAACAAGAGGCGGGCCCAGGGCAAGCCCATCGACAAGCCCAACATTGTCACCGGAGCAAACGTTCAGGTATGCTGGGAGAAATTTGCAAGGTACTTCGAGGTGGAGCTAAAGGAAGTAAAGCTAAGGGATGGATACTATGTCATGGACCCTGAAAAGGCAGTAGATTTGGTTGATGAGAACACCATTTGTGTAGCTGCTATTCTTGGTTCCACTCTTAATGGAGAGTTCGAAGATGTCAAACTCCTCAATGATCTCTTGATCGAGAAGAACCGTCAATCCGGATGGGACACTCCTATTCATGTCGATGCAGCAAGTGGTGGGTTCATTGCTCCATTTCTTTACCCAGAACTGGATTGGGATTTCCGTTTGCCACTTGTGAAGAGTATCAACGTGAGCGGGCACAAGTATGGGCTTGTGTATGCTGGCATTGGTTGGGTCATCTGGAGGCAAAAGGAAGACTTGCCAGAAGAACTAATCTTCCATATCAACTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCAAGCCAAGTCATTGCTCAATACTACCAGCTCATCCGCTTAGGATATGAAGGCTACAAGAATGTGATGGAGAATTGCCGGGAAAACATGATAGTACTAAAAGAAGGGTTGGAAAAGACAGGGCGCTTCGACATAATCTCCAAGGACGTTGGAGTGCCCTTAGTGGCGTTCTCCTTAAAAGACAATAGCCGTCACAACGAGTTCGAAATTTCCGACCTTCTACGACGGTTTGGTTGGATCGTCCCGGCTTATACGATGCCTCCAGATGCTCAACACATAACGGTTCTGCGCGTCGTGATCCGGGAAGATTTTTCTAGAACTCTTGCAGATCGTCTCGTGAACGACATTCAGAAGGTTTTGCGTGAGATTGATTGCCTTCCGGCTAGGATTAGTACTAAGGTAGCAGATAATGGGAAGACCCTTCAGGTTGTTTCAAAGCGTGAGATGACGAAGGATGAGATGGACAGGAAAACAAGGGAAATCACTACGATTTGGAAGAAGTTTGTCATGGAGAGGAAGAAGATGAATGGTGTTTGCTAG 1506 47.88 MVLTKIESLETDASIHSTFGSRYVRTGLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMASVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNKRRAQGKPIDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVDLVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNRQSGWDTPIHVDAASGGFIAPFLYPELDWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRQKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRENMIVLKEGLEKTGRFDIISKDVGVPLVAFSLKDNSRHNEFEISDLLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLADRLVNDIQKVLREIDCLPARISTKVADNGKTLQVVSKREMTKDEMDRKTREITTIWKKFVMERKKMNGVC 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8815301 8818073 - Conep18aG0128500.1 Cone18ag1245 458206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1245 501 Gene3D - 1 66 - -
Cone18ag1245 501 Gene3D - 67 361 IPR015421 -
Cone18ag1245 501 NCBIfam glutamate decarboxylase 17 445 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cone18ag1245 501 FunFam Glutamate decarboxylase 1 66 - -
Cone18ag1245 501 Gene3D - 362 449 - -
Cone18ag1245 501 PANTHER GLUTAMATE DECARBOXYLASE 1 501 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cone18ag1245 501 Pfam Pyridoxal-dependent decarboxylase conserved domain 34 382 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cone18ag1245 501 CDD DOPA_deC_like 60 440 - -
Cone18ag1245 501 FunFam Glutamate decarboxylase 362 449 - -
Cone18ag1245 501 SUPERFAMILY PLP-dependent transferases 15 445 IPR015424 -
Cone18ag1245 501 FunFam Glutamate decarboxylase 67 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0352 Cone-Chr13:3187624 Cone18ag1245 Cone-Chr18:8815301 1.73E-284 transposed
Cone19ag0368 Cone-Chr19:3118052 Cone18ag1245 Cone-Chr18:8815301 3.33E-291 transposed
Cone11ag0242 Cone-Chr11:1162359 Cone18ag1245 Cone-Chr18:8815301 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1245 K01580 - csv:101216119 879.396