Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1249 ATGTCAGCAGCTCTAACACTAGCTTACTTGCTGTTCACACTAGCAGCAACTCTCGCCACCTCACACTATTCTTCTTCTTCTTCTTCTTCATCACCTTCTCTTCCATCAACTTCTTCTCCGTCCTCTTCTCTGACGGAGTGGAAATCCGCACGCGCAACCTACTACGCGGCCTCAGACCCCCGCGACTTGGTAGGCGGTGCCTGTGGCTATGGAGACCTAGTGAAAGCAGGTTACGGCATGGCCACTGTCGGATTGAGCGAGGCACTGTTCGAGCGCGGCGGGATCTGCGGCGCTTGCTTCCAGCTGAAGTGCGTCGACGATCTCCGATGGTGTATTCCTGGTACTTCCATTCTCGTCACCGCCACTAACTTCTGTGCGCCTAACTATGGATTCACCTCAGAAGGCGGTGGCCACTGCAACCCTCCGAACAAGCATTTCGTGCTTCCGATCGAAGCTTTCGAGAAGATCGCCATGTGGAAAGTTGGTAACATGCCCATCCAGTATCGCAGGATCAAGTGCCGGAAAGAAGGGGGGATTAGGTTTACGATAGATGGTTCGGATATCTTTGTCTCCGTGCTGATAAGTAACGCGGCCGGTGCTGGAGATATAGTAGGGGTAAAGGTCAAGGGCTCGAAAACGGGATGGCTTCCGATGGGTCGGAATTGGGGGCAAAATTGGCATATCAATGCTGATTTAAGAAACCAACCTCTTTCATTTGAGGTAACAAGTAGTGATGGGCTCACTGTTACTTCTTATAATGTTGCCCCTGTGGGTTGGAAATTTGGACAGAGCTTTGAAGGCAAGCAGTTTGAATCTTGA 819 51.16 MSAALTLAYLLFTLAATLATSHYSSSSSSSSPSLPSTSSPSSSLTEWKSARATYYAASDPRDLVGGACGYGDLVKAGYGMATVGLSEALFERGGICGACFQLKCVDDLRWCIPGTSILVTATNFCAPNYGFTSEGGGHCNPPNKHFVLPIEAFEKIAMWKVGNMPIQYRRIKCRKEGGIRFTIDGSDIFVSVLISNAAGAGDIVGVKVKGSKTGWLPMGRNWGQNWHINADLRNQPLSFEVTSSDGLTVTSYNVAPVGWKFGQSFEGKQFES 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8835827 8838696 - Conep18aG0128900.1 Cone18ag1249 458210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1249 272 Gene3D - 178 270 IPR036749 -
Cone18ag1249 272 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576(InterPro)
Cone18ag1249 272 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576(InterPro)
Cone18ag1249 272 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576(InterPro)
Cone18ag1249 272 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576(InterPro)
Cone18ag1249 272 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576(InterPro)
Cone18ag1249 272 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576(InterPro)
Cone18ag1249 272 PANTHER EXPANSIN-A15 13 270 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 Gene3D - 31 174 IPR036908 -
Cone18ag1249 272 SUPERFAMILY Barwin-like endoglucanases 46 196 IPR036908 -
Cone18ag1249 272 Pfam Lytic transglycolase 83 168 IPR009009 -
Cone18ag1249 272 CDD DPBB_EXPA_N 46 173 - -
Cone18ag1249 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 178 IPR007112 -
Cone18ag1249 272 PRINTS Expansin signature 104 115 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 PRINTS Expansin signature 253 269 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 PRINTS Expansin signature 77 91 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 PRINTS Expansin signature 189 210 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 PRINTS Expansin signature 136 153 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 PRINTS Expansin signature 177 189 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 PRINTS Expansin signature 224 245 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 PRINTS Expansin signature 117 127 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 PRINTS Expansin signature 153 166 IPR002963 GO:0009664(InterPro)
Cone18ag1249 272 Pfam Expansin C-terminal domain 179 256 IPR007117 -
Cone18ag1249 272 SUPERFAMILY PHL pollen allergen 175 267 IPR036749 -
Cone18ag1249 272 MobiDBLite consensus disorder prediction 23 43 - -
Cone18ag1249 272 SMART dpbb_1 82 168 IPR007112 -
Cone18ag1249 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 267 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0236 Cone-Chr11:1143911 Cone18ag1249 Cone-Chr18:8835827 1.47E-175 dispersed
Cone18ag1249 Cone-Chr18:8835827 Cone1ag0781 Cone-Chr1:53837989 7.79E-95 dispersed
Cone18ag1249 Cone-Chr18:8835827 Cone11ag1137 Cone-Chr11:8754627 5.87E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1249 - - - 0.0