Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1261 ATGGGAGATCAATCGTGCGACTTAGCGCTCAGTCTTGGACTGGGATTTGATGAACATATTCCGAGGCAAAAAAAGATTAAAAACAATACTATAAAGCAACCTCTAGTTCATCCTCCTCCTCCTTATCATGCCTTAAGCTTAGACTTATCATTTGGTCTTTTTCCAACAAGGCAGGAAGCTGGTAATTATAACGTTAATCATAATCGTCGCCATGGATATAAGACAAGATCATCAACTCATGAAGAAGAAGAAGAAGATCACATGAATTCACGTGATCACGATGATGAGATGAAGATGATGATGAAGAAGAAGAAGAAAAGCAATAATAATATTAATGGAGAAAGAAAGAAATTGCGGCTTTCTAAGGAACAGTCCACCTTGTTAGAAGGCAGCTTCAAATTGCATATGACCCTCAATCCGGCTCAGAAACAGGCACTCGCTGATCAGTTGAAGCTGAAGCCAAGACAAGTGGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACGAAGCTGAAACAGACGGAGGTAGACTGTGAATTCTTGAAGAAATGCTGTGAAAGTTTAAACAACGAAAATAGGAGGCTAAAGAGAGAGGTCCAGGATTTGAGATCACTTAAACTCGGGTCCACTTCACCGTTTTTCACTAATCAGCTACAACAAACGCCGGCGAAATTCATAACTTGTCAATCTTGCAAAACCGCCGCTGAAGTACCAAATAACAGTCCACCATCAGCTGCGGTGGTTGGTATTGTCGGCAAGTCTAGCAATAACAATAAATTTGAGCGCGGCTCTAGCTAA 795 41.26 MGDQSCDLALSLGLGFDEHIPRQKKIKNNTIKQPLVHPPPPYHALSLDLSFGLFPTRQEAGNYNVNHNRRHGYKTRSSTHEEEEEDHMNSRDHDDEMKMMMKKKKKSNNNINGERKKLRLSKEQSTLLEGSFKLHMTLNPAQKQALADQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLNNENRRLKREVQDLRSLKLGSTSPFFTNQLQQTPAKFITCQSCKTAAEVPNNSPPSAAVVGIVGKSSNNNKFERGSS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8891022 8891985 - Conep18aG0130100.1 Cone18ag1261 458222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1261 264 SMART halz 171 214 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1261 264 Pfam Homeobox associated leucine zipper 171 204 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1261 264 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 4 236 IPR050762 -
Cone18ag1261 264 Gene3D - 119 169 - -
Cone18ag1261 264 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677(InterPro)
Cone18ag1261 264 Pfam Homeodomain 115 169 IPR001356 GO:0003677(InterPro)
Cone18ag1261 264 SUPERFAMILY Homeodomain-like 112 180 IPR009057 -
Cone18ag1261 264 MobiDBLite consensus disorder prediction 63 95 - -
Cone18ag1261 264 CDD homeodomain 115 172 IPR001356 GO:0003677(InterPro)
Cone18ag1261 264 MobiDBLite consensus disorder prediction 75 95 - -
Cone18ag1261 264 Coils Coil 170 204 - -
Cone18ag1261 264 SMART HOX_1 113 175 IPR001356 GO:0003677(InterPro)
Cone18ag1261 264 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1261 Cone-Chr18:8891022 Cone6ag1484 Cone-Chr6:11792840 2.93E-44 dispersed
Cone11ag0221 Cone-Chr11:1094733 Cone18ag1261 Cone-Chr18:8891022 4.39E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45236 PF01201 Ribosomal_S8e 2.90E-56 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1261 K09338 - mdm:103452920 203.756