Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag1261 | ATGGGAGATCAATCGTGCGACTTAGCGCTCAGTCTTGGACTGGGATTTGATGAACATATTCCGAGGCAAAAAAAGATTAAAAACAATACTATAAAGCAACCTCTAGTTCATCCTCCTCCTCCTTATCATGCCTTAAGCTTAGACTTATCATTTGGTCTTTTTCCAACAAGGCAGGAAGCTGGTAATTATAACGTTAATCATAATCGTCGCCATGGATATAAGACAAGATCATCAACTCATGAAGAAGAAGAAGAAGATCACATGAATTCACGTGATCACGATGATGAGATGAAGATGATGATGAAGAAGAAGAAGAAAAGCAATAATAATATTAATGGAGAAAGAAAGAAATTGCGGCTTTCTAAGGAACAGTCCACCTTGTTAGAAGGCAGCTTCAAATTGCATATGACCCTCAATCCGGCTCAGAAACAGGCACTCGCTGATCAGTTGAAGCTGAAGCCAAGACAAGTGGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACGAAGCTGAAACAGACGGAGGTAGACTGTGAATTCTTGAAGAAATGCTGTGAAAGTTTAAACAACGAAAATAGGAGGCTAAAGAGAGAGGTCCAGGATTTGAGATCACTTAAACTCGGGTCCACTTCACCGTTTTTCACTAATCAGCTACAACAAACGCCGGCGAAATTCATAACTTGTCAATCTTGCAAAACCGCCGCTGAAGTACCAAATAACAGTCCACCATCAGCTGCGGTGGTTGGTATTGTCGGCAAGTCTAGCAATAACAATAAATTTGAGCGCGGCTCTAGCTAA | 795 | 41.26 | MGDQSCDLALSLGLGFDEHIPRQKKIKNNTIKQPLVHPPPPYHALSLDLSFGLFPTRQEAGNYNVNHNRRHGYKTRSSTHEEEEEDHMNSRDHDDEMKMMMKKKKKSNNNINGERKKLRLSKEQSTLLEGSFKLHMTLNPAQKQALADQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLNNENRRLKREVQDLRSLKLGSTSPFFTNQLQQTPAKFITCQSCKTAAEVPNNSPPSAAVVGIVGKSSNNNKFERGSS | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 8891022 | 8891985 | - | Conep18aG0130100.1 | Cone18ag1261 | 458222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag1261 | 264 | SMART | halz | 171 | 214 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone18ag1261 | 264 | Pfam | Homeobox associated leucine zipper | 171 | 204 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone18ag1261 | 264 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 4 | 236 | IPR050762 | - | |
Cone18ag1261 | 264 | Gene3D | - | 119 | 169 | - | - | |
Cone18ag1261 | 264 | ProSiteProfiles | 'Homeobox' domain profile. | 111 | 171 | IPR001356 | GO:0003677(InterPro) | |
Cone18ag1261 | 264 | Pfam | Homeodomain | 115 | 169 | IPR001356 | GO:0003677(InterPro) | |
Cone18ag1261 | 264 | SUPERFAMILY | Homeodomain-like | 112 | 180 | IPR009057 | - | |
Cone18ag1261 | 264 | MobiDBLite | consensus disorder prediction | 63 | 95 | - | - | |
Cone18ag1261 | 264 | CDD | homeodomain | 115 | 172 | IPR001356 | GO:0003677(InterPro) | |
Cone18ag1261 | 264 | MobiDBLite | consensus disorder prediction | 75 | 95 | - | - | |
Cone18ag1261 | 264 | Coils | Coil | 170 | 204 | - | - | |
Cone18ag1261 | 264 | SMART | HOX_1 | 113 | 175 | IPR001356 | GO:0003677(InterPro) | |
Cone18ag1261 | 264 | ProSitePatterns | 'Homeobox' domain signature. | 146 | 169 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone18ag1261 | Cone-Chr18:8891022 | Cone6ag1484 | Cone-Chr6:11792840 | 2.93E-44 | dispersed | |
Cone11ag0221 | Cone-Chr11:1094733 | Cone18ag1261 | Cone-Chr18:8891022 | 4.39E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45236 | PF01201 | Ribosomal_S8e | 2.90E-56 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag1261 | K09338 | - | mdm:103452920 | 203.756 |