Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1268 ATGATGGTTGATCAGACAGCGGCGATACAAGAAGCAGCCTATGCCGGCATGAAGAGCATGGAGCACCTGATCCAAATCCTGTTCCATCAACCGCCACCTCAGAGCTGCCGTCTTAACCGTCACCCGGAATTCACGGAAGTATCTGACGCCACCGTCGCCAAGTTTAAACAAGTTATCTCACTCTTAAACCGGACTGGCCACGCCCGGTTCCGCCGCGGACCCAGAAACACACCGGCACCGTCTGATTCTGATTCTCACCCATCCGACCCGGTTCACGACCTCTCTCGTCTTAACTTGGCCGGTTCGACTAAATCTTATCCCGATCATCAACCCAACCTGAATACAACTAAATCGTTGAAACGAAAGGCGTCTACTGAGTCAGAGACCGAGTTGTTGTCTATGACTCAGTACACAAAGGAGCTGGCATTTACCACGTCAGCAGCTCATAATTCTTCCTCTACGTCGTCGTTGTTCTCCTCGATTACTGGAGACAGCAGCGTTTCCAACGGAAAACTAGGTCCGTCTCTGTTTTTAGCACCGACGACAACCTTCTCCTCCGGTAAACCGCCTCTGTCGTTGACTCACAGGAAAAAGTGCCAAGAGCACGCCGTCTCCGGTAAAACTTCCTCCTCCGGCCGCTGCCACTGCTCCACGAGAAGAAAATTGAGGACGAAGAGGAGCATAAGAGTGCCGGCGATTAGTTCCAGGATCGCCGATATCCCCGCCGATGAATACTCGTGGAGAAAATACGGCCAAAAGCCGATCAAAGGTTCACCTTACCCACGAGCGTACTACAAGTGCAGTAGCATAAGAGGGTGTCCAGCAAGGAAACACGTGGAAAGGGCCCAAGATAACCCCACGATGCTCATCGTGACTTACGAAGGAGAGCACCGTCACGGCGGCCCACAGGCGGCGGCACAACCTGAGTCAGCTGCCGCCAATGGGTTTCTCTTACACAAGAGTTAA 966 52.8 MMVDQTAAIQEAAYAGMKSMEHLIQILFHQPPPQSCRLNRHPEFTEVSDATVAKFKQVISLLNRTGHARFRRGPRNTPAPSDSDSHPSDPVHDLSRLNLAGSTKSYPDHQPNLNTTKSLKRKASTESETELLSMTQYTKELAFTTSAAHNSSSTSSLFSSITGDSSVSNGKLGPSLFLAPTTTFSSGKPPLSLTHRKKCQEHAVSGKTSSSGRCHCSTRRKLRTKRSIRVPAISSRIADIPADEYSWRKYGQKPIKGSPYPRAYYKCSSIRGCPARKHVERAQDNPTMLIVTYEGEHRHGGPQAAAQPESAAANGFLLHKS 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8911535 8913040 - Conep18aG0130800.1 Cone18ag1268 458229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1268 321 Pfam Plant zinc cluster domain 196 239 IPR018872 -
Cone18ag1268 321 SUPERFAMILY WRKY DNA-binding domain 239 302 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1268 321 Gene3D WRKY domain 231 303 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1268 321 MobiDBLite consensus disorder prediction 66 131 - -
Cone18ag1268 321 MobiDBLite consensus disorder prediction 298 321 - -
Cone18ag1268 321 SMART WRKY_cls 241 301 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1268 321 MobiDBLite consensus disorder prediction 98 120 - -
Cone18ag1268 321 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone18ag1268 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 304 IPR044810 GO:0003700(InterPro)
Cone18ag1268 321 FunFam WRKY transcription factor 65 225 302 - -
Cone18ag1268 321 Pfam WRKY DNA -binding domain 243 299 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1083 Cone-Chr17:8073748 Cone18ag1268 Cone-Chr18:8911535 2.17E-82 dispersed
Cone18ag1268 Cone-Chr18:8911535 Cone4ag1861 Cone-Chr4:13342698 1.28E-88 dispersed
Cone11ag0216 Cone-Chr11:1074395 Cone18ag1268 Cone-Chr18:8911535 3.03E-194 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45237 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1268 - - - 0.0