Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1290 ATGACGAATACTACTCATGCGAGCAGCTTGATGATCTCTAGTTTCCTGCCTTTGTTTTTTCTTTTTCTTCTTCCTCTTCTCCTCCCTCTAACTTCTGGTCAGGGACTTACAACTGATTTTTACAAGAACTCTTGTCCGAATGTTGAATCCTTAGTCCGCTCCGCCGTCTCGCTGAAATTCCAACAGACCTTCGTCACTGCCCCGGCAACTCTTCGGCTCTTTTTTCATGATTGTTTTGTCCGGGGTTGTGATGCTTCAGTGTTGCTCGCGTCACCTACTAATCGAGCTGAGAAAGATCATCCGGACGATATCTCTTTAGCCGGAGATGGATTTGACACTGTAGTCAAAGCCAAAGCAGCCGTTGATAGTGACCCTCAATGCAAAAACAAAGTTTCATGTGCAGATATTCTAGCCCTAGCCACTAGAGATGTTGTCGTGTTGACGGGCGGACCAGCATATACCGTCGAACTCGGTAGGCGGGACGGAACAATATCGACAATAGCCAGCGTTCAACGTAAACTGCCTCACCCTGAATTCAATCTAGACCAACTCAATTCCAATTTTTCCTCCAATGATCTCAACCAAACAGATATGATTGCATTATCAGGGGCCCACACAATTGGATTCTCTCATTGCAGCAAATTCTCCAAGAGAATATACCGTTTTAGCTCGACAACAAGAATAGACCCGACACTAAACCGGACTTATGCTTTGCAGCTCCAGCAGATGTGTCCGATTAATGTCGATCCAAGGATAGCAATTAACATGGATCCAAACACGCCTAATACATTTGACAATGTCTATTTCAAAAACCTTCAACAAGGCAAGGGTCTGTTTAGTTCTGATCAGGTGCTATTTACTGATACTAGATCTAGGAACACAGTTAACCAATTTGCATCAAGTAGTGATGCTTTTAACCGGGCTTTTATTACTGCGATTACCAAGTTGGGCCGCGTCGGTGTTAAAACAGGAAATCAAGGTCAGATTCGGGTCGACTGTACCCGGATAAACTAA 1014 44.28 MTNTTHASSLMISSFLPLFFLFLLPLLLPLTSGQGLTTDFYKNSCPNVESLVRSAVSLKFQQTFVTAPATLRLFFHDCFVRGCDASVLLASPTNRAEKDHPDDISLAGDGFDTVVKAKAAVDSDPQCKNKVSCADILALATRDVVVLTGGPAYTVELGRRDGTISTIASVQRKLPHPEFNLDQLNSNFSSNDLNQTDMIALSGAHTIGFSHCSKFSKRIYRFSSTTRIDPTLNRTYALQLQQMCPINVDPRIAINMDPNTPNTFDNVYFKNLQQGKGLFSSDQVLFTDTRSRNTVNQFASSSDAFNRAFITAITKLGRVGVKTGNQGQIRVDCTRIN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9028754 9030200 - Conep18aG0133200.1 Cone18ag1290 458251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1290 337 CDD secretory_peroxidase 35 336 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cone18ag1290 337 Gene3D Peroxidase, domain 2 175 316 - -
Cone18ag1290 337 PANTHER - 22 337 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 FunFam Peroxidase 175 316 - -
Cone18ag1290 337 FunFam Peroxidase 39 186 - -
Cone18ag1290 337 PRINTS Haem peroxidase superfamily signature 149 161 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Haem peroxidase superfamily signature 131 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Haem peroxidase superfamily signature 257 272 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Haem peroxidase superfamily signature 197 212 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Haem peroxidase superfamily signature 67 81 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 SUPERFAMILY Heme-dependent peroxidases 35 337 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 Pfam Peroxidase 52 300 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 ProSiteProfiles Plant heme peroxidase family profile. 35 337 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 ProSitePatterns Peroxidases proximal heme-ligand signature. 197 207 IPR019793 -
Cone18ag1290 337 ProSitePatterns Peroxidases active site signature. 67 78 IPR019794 GO:0004601(InterPro)
Cone18ag1290 337 Gene3D - 39 337 - -
Cone18ag1290 337 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Plant peroxidase signature 130 140 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Plant peroxidase signature 149 164 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Plant peroxidase signature 45 64 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Plant peroxidase signature 196 208 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Plant peroxidase signature 69 89 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Plant peroxidase signature 271 288 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1290 337 PRINTS Plant peroxidase signature 255 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0046 Cone-Chr11:222204 Cone18ag1290 Cone-Chr18:9028754 2.57E-138 dispersed
Cone18ag1290 Cone-Chr18:9028754 Cone6ag1447 Cone-Chr6:11576611 3.55E-148 dispersed
Cone7ag1760 Cone-Chr7:11625059 Cone18ag1290 Cone-Chr18:9028754 4.40E-36 dispersed
Cone18ag1290 Cone-Chr18:9028754 Cone4ag1856 Cone-Chr4:13321633 1.39E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1290 K00430 - mdm:103453173 501.901