Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1297 ATGGATCCTTCTTCTCAGAACTGGCTCGGTTTTTCTCTCTCTAACCAACCCCATCTCTCTCTCTTTCACGCCTTCTCCTCCTCCACCTCCACTTCTCCAGAGGGTGGTGTACTGCAGGTGGACCCACATGTTGTTCATGAAGACGATGCAAGTGCAACCGACCTGTCGATATTCACATCTAGCGGTCCGAAGCTGGAGGACTTTCTGGGTGGCTCCGATAATAATAATATTCACTTCTCTACTCATCATCATCATCATCATCACCATCATCAAACTCAGCCGCCGCCGCCTCCTCCGCAGCTCGGTATCTGTGATTCTCACGAAATATATGATTCCGAGCTCAAATCCATAGCCGCCACCTTTTTCCGCGGTTTCAACTCAAACTGTACTGCAACTAGTATTAATACTACTCATCATGAACAAACTAGTCAAGCTCAAAACATTGCCATGCAACCTCCGTCGCATGCTTTGGTGGGTCTTCCTGATCATCAACCAACTCCACCGTCCAAGAAGACTGTTGATACCTTCGGCCAACGCACCTCCGTCTACCGTGGCGTTACCCGGCATAGATGGACAGGAAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGAAGAGAGGGTCAGAGCAGGAAAGGAAGACAAGTTTACTTGGGTGGTTATGATAAGGAAGAAAAAGCAGCTCGAGCTTACGATCTCGCCGCACTTAAATACTGGGGTCCGACCACCACCACGAACTTCTCGGTCTCAACCTATGAGAAGGAAGTAGAAGATATGAAGAACATGACCAGACAGGAATTTGTTGCTTCACTTCGAAGGAAAAGTAGTGGTTTTTCTAGAGGAGCTTCCATTTACAGAGGGGTAACAAGGCACCATCAACATGGTAGATGGCAGGCAAGAATAGGAAGAGTGGCTGGCAACAAAGATCTTTATCTTGGCACATTCAGCACTCAGGAAGAGGCAGCGGAAGCTTACGACATTGCCGCTATAAAATTCCGCGGCCTAAATGCTGTAACAAACTTCGACATGAGCCGCTACAATGTGAAGAGCATAGCTAATAGCAACCTTCCAATTGGCGGGATGTCTGGGTCCCACAAGTCGGCTAGAAACTCCTCCGACTCGACCACTAATTCCGATAACAAAAGCTTTGATGGAATCAGCCAACAACAACAGTCCGACCTGGACCTAGACCATTCCTCATCGCCCTCCGGAACCTTTATGTCAAGTCAATTATTACACCATCAACCTGCGTCGTTAGCATCTACACTAAGCTTTGCAATTCCTATCAAACAGGACACAACAACCAGCCTGGATCATCATCAATATTGGACCCTTCTAGGGTATAATGGCAGCAATAACTCAAACCCGAACAATGCCAAGAACCCTAACCTTAGTTTTGGTACTGCTGCACCATTTACAATGGATTTTTCATCGACTAATAATAATTCTTCCTCGGTGAATGAAAGCAATAGCGGGTTGTTATTTAATGGTGAATTTGTTCTTGATCATGATCATCAGCAACAAATTGACGGTAATTCAACATCAACAGCAGTACTAGCCGACATGAATGATCTTAATAATTACCATGAAGCGACGTCAACTAGTGCTACTTCATATGGAAATTGGATTGGAGCGTCATCATCTCTGCATGCACTCCAAACTCATGCAAAGCCTAATGTGTATCAGACACCAATTTTCGGAATGGAATGA 1710 45.61 MDPSSQNWLGFSLSNQPHLSLFHAFSSSTSTSPEGGVLQVDPHVVHEDDASATDLSIFTSSGPKLEDFLGGSDNNNIHFSTHHHHHHHHHQTQPPPPPPQLGICDSHEIYDSELKSIAATFFRGFNSNCTATSINTTHHEQTSQAQNIAMQPPSHALVGLPDHQPTPPSKKTVDTFGQRTSVYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFSVSTYEKEVEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYNVKSIANSNLPIGGMSGSHKSARNSSDSTTNSDNKSFDGISQQQQSDLDLDHSSSPSGTFMSSQLLHHQPASLASTLSFAIPIKQDTTTSLDHHQYWTLLGYNGSNNSNPNNAKNPNLSFGTAAPFTMDFSSTNNNSSSVNESNSGLLFNGEFVLDHDHQQQIDGNSTSTAVLADMNDLNNYHEATSTSATSYGNWIGASSSLHALQTHAKPNVYQTPIFGME 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9057525 9060841 - Conep18aG0133900.1 Cone18ag1297 458258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1297 569 PRINTS Ethylene responsive element binding protein signature 324 344 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 PRINTS Ethylene responsive element binding protein signature 183 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 CDD AP2 283 344 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 Gene3D AP2/ERF domain 284 344 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 Gene3D AP2/ERF domain 182 250 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 MobiDBLite consensus disorder prediction 358 410 - -
Cone18ag1297 569 FunFam AP2-like ethylene-responsive transcription factor 283 344 - -
Cone18ag1297 569 SUPERFAMILY DNA-binding domain 181 250 IPR016177 GO:0003677(InterPro)
Cone18ag1297 569 Pfam AP2 domain 285 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 Pfam AP2 domain 181 240 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 ProSiteProfiles AP2/ERF domain profile. 284 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 FunFam AP2-like ethylene-responsive transcription factor ANT 181 250 - -
Cone18ag1297 569 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 131 433 - -
Cone18ag1297 569 SUPERFAMILY DNA-binding domain 283 344 IPR016177 GO:0003677(InterPro)
Cone18ag1297 569 CDD AP2 181 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 SMART rav1_2 182 254 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 SMART rav1_2 284 348 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 ProSiteProfiles AP2/ERF domain profile. 182 248 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag1297 569 MobiDBLite consensus disorder prediction 76 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1297 Cone-Chr18:9057525 Cone5ag1468 Cone-Chr5:9723706 3.49E-110 dispersed
Cone11ag0188 Cone-Chr11:914968 Cone18ag1297 Cone-Chr18:9057525 2.08E-282 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45239 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1297 K09285 - mdm:103424209 534.643