Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1315 ATGAAGCTTCTTCATCATCCTAACATTGTTAGAATCCATGAGGTTATTGGTACAAAGACCAAGATCTACATTGTAATGGAGTATGTCCCAGGAGGGCAACTCTCAGACAAGCTGTCTTATGTGAAGAAACTAAGTGAGGAAGAAGCAAGAAAAATGTTCCAGCAACTAATAGATGCAGTGGATTACTGCCATAACAAAGGAATATATCACAGAGACATCAAGCCGGAAAACTTGCTCTTGGATCACAAGGGCAATCTCAAAGTATCCGATTTCGGACTAAGCGCGTTAAGAAAGCCTGGAGATCAACTAACTACAGCATGTGGCTCTCCAAGCTATGTAGCACCGGAGTTGCTAGTAAATAAAGGCTATGATGGAGCAGCAGCCGATATTTGGTCGTGTGGTGTAGTACTCTTCGAGTTATTGTCCGGTAACTTACCATTCGACGACCGCAATCTAATAAACTTGTACAGAAAAATAGCAAGAGCGGAATGTACGTACCCGGAATGGTTTACAGAGAGCCAGAAGAAGTTCATATCGAAAATATTTGAGCCGAACCCGAGACAGAGAATTACAATTCCGGAGATTGTTGATGATCCATGGTTTCAAATCGATTACAAGCCAACGTGCGGATATGAAAATGACGGGGAAGTTGATTTGGATGATGTTAATGCCGCTTTTGACTCGACTGAGGATCATGAAACGGAGACAAAGATGCCGAAATTGCCGAGTTTTATTAATGCTTTCCAGTTGATCGCCATGTCGAATGATCTCGACTTGTCTGGTCTCTTTGAAGCAGAGGATGAGCATAAACAGAAAATGAGATTCGGGTCGAAGTATACGATTGAAAAAACAATAGAGAAAATAGAAGCAGCTGCAACCGATGCGAGTTTATCAGTAGAAAAAATGAAAAACCTCAAGTTGAAAATTCACCCGAAAACGAAGATGACAAGATGTTCTAAATCATATTTGGACTTTTCGGCCCAGGTGATTGAGGTTGCTCCTACTAATTGTGTAATAGATGTATCGAAATCTGCAGGAGAGCTAGTAATCTACGATGAAGAGTTTAGCTATTCTGTTCACACAGAAGTCTGGTGCCTCAGAATTGCAATCGGCCGATGTAGAAGTATGCAGCAATACAAGAAGCAATCCAGAGATCAATGA 1161 41.34 MKLLHHPNIVRIHEVIGTKTKIYIVMEYVPGGQLSDKLSYVKKLSEEEARKMFQQLIDAVDYCHNKGIYHRDIKPENLLLDHKGNLKVSDFGLSALRKPGDQLTTACGSPSYVAPELLVNKGYDGAAADIWSCGVVLFELLSGNLPFDDRNLINLYRKIARAECTYPEWFTESQKKFISKIFEPNPRQRITIPEIVDDPWFQIDYKPTCGYENDGEVDLDDVNAAFDSTEDHETETKMPKLPSFINAFQLIAMSNDLDLSGLFEAEDEHKQKMRFGSKYTIEKTIEKIEAAATDASLSVEKMKNLKLKIHPKTKMTRCSKSYLDFSAQVIEVAPTNCVIDVSKSAGELVIYDEEFSYSVHTEVWCLRIAIGRCRSMQQYKKQSRDQ 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9128306 9131158 - Conep18aG0135700.1 Cone18ag1315 458276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1315 386 Gene3D Kinase associated domain 1, KA1 240 364 - -
Cone18ag1315 386 SUPERFAMILY Protein kinase-like (PK-like) 1 202 IPR011009 -
Cone18ag1315 386 FunFam Maternal embryonic leucine zipper kinase 1 257 - -
Cone18ag1315 386 Gene3D Transferase(Phosphotransferase) domain 1 34 220 - -
Cone18ag1315 386 Pfam NAF domain 242 301 IPR004041 GO:0007165(InterPro)
Cone18ag1315 386 FunFam Non-specific serine/threonine protein kinase 240 363 - -
Cone18ag1315 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 68 80 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1315 386 Pfam Protein kinase domain 1 201 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1315 386 SMART serkin_6 1 201 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1315 386 CDD CIPK_C 246 353 - -
Cone18ag1315 386 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 349 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone18ag1315 386 ProSiteProfiles Protein kinase domain profile. 1 201 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1315 386 Gene3D Phosphorylase Kinase; domain 1 1 33 - -
Cone18ag1315 386 ProSiteProfiles NAF domain profile. 240 264 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1315 Cone-Chr18:9128306 Cone5ag1426 Cone-Chr5:9014618 1.91E-106 dispersed
Cone11ag0170 Cone-Chr11:839816 Cone18ag1315 Cone-Chr18:9128306 8.35E-239 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82349 PF04618 HD-ZIP_N 2.40E-24 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1315 - - - 0.0