Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1333 ATGGCCGGAATTAAGGTCATAAGTTTGATGTTCCTTTTTTATTTTTTTGTGATGTTCATGACCATAAAGGGTGATGGTTTTGAAGAGGATGGTAAGTATTGGAAGAAACGAGCTAAAGCAGCCGAGAAGGCGGCACTCAAAGATTATCAACCCGATCCGATGAATGTCACCTTGCAATTCAATTCACGTGTTAACAAGGACGTTGATCTGACAGAAAGGCTTGGAGCCAACAGCACAAGAAGAGGCCTCCGCGGTCGAAAGCCAAAATACTTAGATGGGCCGTGCAGAGCCACTAATCCAATTGACAGGTGCTGGCGTTGCGACCCTCACTGGGCCAAAAACCGCAAGAAGATGGCCAAATGCGTGCAAGGTTTTGGCCGCCGAACCCGAGGAGGTCTAAAGGGAAAATTTTACACCGTAGTAGATTCTTCAGATGACGACGTAATAAATCCTAAACCGGGGACCCTACGTCATGCGGTCATTCAGAAGAAACCGCTTTGGATCATCTTTGCGCGTAGCATGGTGATTAAATTGAAGGCAGAGCTTATAATGACTAGCCATAAGACCATTGATGCACGCGGAGCTAATGTTCACGTAGCATTTGGGGCCCAGATTACTCTTCAATTTGTGAAGAACGTCATTATCCACGGTCTTCACATACATCATATCATTGTCCAAAGTGGTGGAATGATTAGAGACTCTATGGAGCACTTTGGTCTCAGACAACATAGCGATGGAGACGGGATTTCAATCTTCGGATCAAGTAGAATTTGGATCGATCACGTCTCATTTTCTAATTGTGCAGATGGATTGATTGATGTTGTTCAGGGATCTACTGCAATCACCATCTCAAACAACCACTTAACTCATCATAACGATGTTATGCTGCTCGGAGCAAGTGATTCATTCGCCGGAGACTCCATAATGCAAGTGACGATAGCATTTAACCATTTCGGACAAGGATGTGTGCAAAGGATGCCGGCATGTCGATGGGGGTTTTTCCATGTGGTGAACAATGACTATACACATTGGCTAATGTACGCCATTGGAGGTAGCACACATCCCACCATTCTAAGCCAAGGGAATCGATTCATCGCCCCATCAAATCCTAACGCGAAGCAGATTACACATAGGGATAACGCGCCCGAGAGCGTGTGGCGGGGTTGGACATGGAGGTCGGAAGGAGATCTAATGATGAACGGAGCCTTCTTCGTCGAAGGAGGTAATCCGGTGGACAAGCAACGTTACAGTAAACGTGATGTAATTCAGGCTAAGCCAGGGACTTATGTCAAAAGGCTTACACGCTATGCTGGATCACTCAACTGTTATGTTGGTAAACCTTGTTAA 1347 45.73 MAGIKVISLMFLFYFFVMFMTIKGDGFEEDGKYWKKRAKAAEKAALKDYQPDPMNVTLQFNSRVNKDVDLTERLGANSTRRGLRGRKPKYLDGPCRATNPIDRCWRCDPHWAKNRKKMAKCVQGFGRRTRGGLKGKFYTVVDSSDDDVINPKPGTLRHAVIQKKPLWIIFARSMVIKLKAELIMTSHKTIDARGANVHVAFGAQITLQFVKNVIIHGLHIHHIIVQSGGMIRDSMEHFGLRQHSDGDGISIFGSSRIWIDHVSFSNCADGLIDVVQGSTAITISNNHLTHHNDVMLLGASDSFAGDSIMQVTIAFNHFGQGCVQRMPACRWGFFHVVNNDYTHWLMYAIGGSTHPTILSQGNRFIAPSNPNAKQITHRDNAPESVWRGWTWRSEGDLMMNGAFFVEGGNPVDKQRYSKRDVIQAKPGTYVKRLTRYAGSLNCYVGKPC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9223112 9224693 - Conep18aG0137500.1 Cone18ag1333 458294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1333 448 Gene3D - 98 441 IPR012334 -
Cone18ag1333 448 PANTHER PECTATE LYASE 18-RELATED 12 445 IPR045032 GO:0030570(InterPro)
Cone18ag1333 448 Pfam Pectate lyase 184 364 IPR002022 -
Cone18ag1333 448 Pfam Pectate lyase, N terminus 33 83 IPR007524 GO:0030570(InterPro)
Cone18ag1333 448 SMART amb_all 173 370 IPR002022 -
Cone18ag1333 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Cone18ag1333 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Cone18ag1333 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Cone18ag1333 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Cone18ag1333 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Cone18ag1333 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Cone18ag1333 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Cone18ag1333 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Cone18ag1333 448 SUPERFAMILY Pectin lyase-like 99 439 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1333 Cone-Chr18:9223112 Cone7ag0370 Cone-Chr7:1620380 3.06E-163 dispersed
Cone11ag0149 Cone-Chr11:699753 Cone18ag1333 Cone-Chr18:9223112 1.93E-301 wgd
Cone16ag0862 Cone-Chr16:9144206 Cone18ag1333 Cone-Chr18:9223112 1.78E-161 wgd
Cone16ag0149 Cone-Chr16:863116 Cone18ag1333 Cone-Chr18:9223112 3.37E-75 wgd
Cone18ag1333 Cone-Chr18:9223112 Cone2ag0181 Cone-Chr2:945453 5.23E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1333 K01728 - csv:101202789 622.468