Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1340 ATGCGGATCAGTATCCGTTTGATCGTGTTCGTAGTAGCTGTGTTTCTTCTAGGTTTTTCTGCTTGTTTTGGAGTTGTAGAAGATGATGAGAAGTGCCTCGAAGGCGTGAAGAACTCTCTGACGAATTCGTTGGGAACGCTGAGTTCATGGAAGTTCGGAAACACAACGTTAGGTTACGTCTGCAGATTCACCGGAGTTACTTGCTGGAACGAACGAGAAAATCGGATAATCGATCTCGAGCTTCCTCAAATGGAACTTTCCGGTACTGTTCCAGACGCTCTTCAGTACTGTGGCAGCTTGCAGGTCTTAGATCTCTCCCAAAACAAACTCTCAGGTTCGATCCCGTCTGATATATGCAAGTGGCTGCCATTTTTAGTAACGTTAGATTTGTCCGATAATGATTTATCTGGCTCTATACCACCTGAACTCGCTAACTGTTCGTATCTGAATAAGCTGATATTGTCGGATAATCGTCTTTCTGGTACTATACCTTATGAATTTACTTCTTTAGGTAGGCTTATTAAGTTTTCAGTTGCGAATAATGATCTTAGTGGTACAGTTCCATCAGCTTTTAGTAAGTTTGATAAGGTCGATTTTGAAGGAAATAGTGGGCTTTGTGGTGGTCCGCTTGGATCAAAGTGTGGTGGATTGAGCAAGAAAAATCTTGCAATTATAATTGCTGCTGGAGTTTTTGGAGCTGCAGCGTCTTTGTTATTGGCTTTTGGATTATGGTGGTGGTTTCATTTAAGGTTGAGTGGGAAAAGAATAGGAGGAGGTGGGTTTTTAAGAGGTGGTGATTGGGCTTCTAGGTTGAGGGCTCATAGATTGACTCAAGTGTCTTTGTTTCAAAAGCCGTTAGTGAAAGTCAAATTGGCGGATCTAATGGCAGCTACTAACAATTTCAGTTTTGAAAATATAATCGTTTCGACTAGAATGGGGACTACTTATAAAGCTGTTCTTCCCGATGGGTCTGCATTAGCAATAAAACGGCTTAGTGCTTGTAAGCTCGGGGAGAAGCAGTTCCGTATGGAGATGAATTGGTTAGGGCAGTTAAGACACCCGAATTTGACACCACTTTTGGGTTATTGTGTTGTGGAAGAAGAAAAGCTTTTGGTTTCTAAGTACATGTCTAATGGGACTCTGTATTCCTTGTTGCATAGAAGTGGGGGGGAGAAGTTGGATTGGCCGACTAGGTTTCGGATTGCTTTAGGTGCAGCAAGAGGTCTTGCATGGCTGCATCATGGGAATGAGCCTCCTTTCATGCACCAGAATATATGTTCAAATGTGATTCTTGTTGATGAAGATTATGATGCTAGGATTATGGACTTTGGATTGGCAAAGCTTGTGGTGAATGATGCCTGTGAGAGTAGTTTCATCAATGGGGACTTGGGTGAACTTGGTTATATTGCTCCAGAGTATTCATCCACCATGGTTGCTTCACTAAAAGGAGATGTATATGGATTAGGCGTGGTTCTTCTAGAGCTGGTGACAGGGCAAAAACCTCTTGAAGTCATCAACGCTGATGAAGAGTATAAGGGTAATTTGGTAGATTGGGTCAATACTCTCTGTAGTTCTGGTCGATTCAAGGATGCCATCGACAGAGATCTTTGCGGAAAGGGAAATGATGAGGAAATTGTTCAGGTCCTGAAAGTTTCTTGTAACTGTGTGAGTCCTCGTCCCAAGGATAGGTGGTCTATGTACCAGATCTATGATTCACTGAAGAGTATGGCTAAAGATCACTCCTTCTCTCAACTGGATAATGAATTTCCGCTGCTTTCTGGCAAGCAGGAAAATGACTGTGATTCCGATTTGAATATGGGAGGAACATGA 1830 42.46 MRISIRLIVFVVAVFLLGFSACFGVVEDDEKCLEGVKNSLTNSLGTLSSWKFGNTTLGYVCRFTGVTCWNERENRIIDLELPQMELSGTVPDALQYCGSLQVLDLSQNKLSGSIPSDICKWLPFLVTLDLSDNDLSGSIPPELANCSYLNKLILSDNRLSGTIPYEFTSLGRLIKFSVANNDLSGTVPSAFSKFDKVDFEGNSGLCGGPLGSKCGGLSKKNLAIIIAAGVFGAAASLLLAFGLWWWFHLRLSGKRIGGGGFLRGGDWASRLRAHRLTQVSLFQKPLVKVKLADLMAATNNFSFENIIVSTRMGTTYKAVLPDGSALAIKRLSACKLGEKQFRMEMNWLGQLRHPNLTPLLGYCVVEEEKLLVSKYMSNGTLYSLLHRSGGEKLDWPTRFRIALGAARGLAWLHHGNEPPFMHQNICSNVILVDEDYDARIMDFGLAKLVVNDACESSFINGDLGELGYIAPEYSSTMVASLKGDVYGLGVVLLELVTGQKPLEVINADEEYKGNLVDWVNTLCSSGRFKDAIDRDLCGKGNDEEIVQVLKVSCNCVSPRPKDRWSMYQIYDSLKSMAKDHSFSQLDNEFPLLSGKQENDCDSDLNMGGT 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9262250 9264923 - Conep18aG0138400.1 Cone18ag1340 458301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1340 609 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Cone18ag1340 609 Pfam Protein tyrosine and serine/threonine kinase 311 509 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1340 609 Gene3D Phosphorylase Kinase; domain 1 262 375 - -
Cone18ag1340 609 Gene3D Ribonuclease Inhibitor 26 216 IPR032675 -
Cone18ag1340 609 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Cone18ag1340 609 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Cone18ag1340 609 Pfam Leucine Rich Repeat 149 170 IPR001611 GO:0005515(InterPro)
Cone18ag1340 609 Pfam Leucine Rich Repeat 125 146 IPR001611 GO:0005515(InterPro)
Cone18ag1340 609 PRINTS Leucine-rich repeat signature 122 135 - -
Cone18ag1340 609 PRINTS Leucine-rich repeat signature 100 113 - -
Cone18ag1340 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 26 215 - -
Cone18ag1340 609 ProSiteProfiles Protein kinase domain profile. 301 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1340 609 Gene3D Transferase(Phosphotransferase) domain 1 376 596 - -
Cone18ag1340 609 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 190 576 IPR050647 -
Cone18ag1340 609 SUPERFAMILY Protein kinase-like (PK-like) 279 573 IPR011009 -
Cone18ag1340 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 376 595 - -
Cone18ag1340 609 SUPERFAMILY L domain-like 28 202 - -
Cone18ag1340 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 263 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1003 Cone-Chr13:8424072 Cone18ag1340 Cone-Chr18:9262250 3.83E-221 dispersed
Cone18ag1340 Cone-Chr18:9262250 Cone19ag0996 Cone-Chr19:7471069 5.59E-232 dispersed
Cone11ag0141 Cone-Chr11:632792 Cone18ag1340 Cone-Chr18:9262250 0 wgd
Cone16ag0887 Cone-Chr16:9226861 Cone18ag1340 Cone-Chr18:9262250 5.24E-246 wgd
Cone18ag1340 Cone-Chr18:9262250 Cone2ag0165 Cone-Chr2:885313 3.23E-255 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82351 PF06966 DUF1295 2.40E-65 CL0115 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1340 - - - 0.0