Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1350 ATGGGTCTACTTTGGGCTTGGGCCCAATATCGCTCAATGTTATTGTCCTTGATCTTGGCTTATTCCTTTCCTTCAAAAGTATTCAGAAGACAAAAACAGAGCATAGTGGTTCTGTATGCGGAAGAGAAGGATGCTTTCTACGTTGTACGACAGGGGGATGCAATCGGAATTTACAAGAATCCAAGTGACTGCCAAGCTCAAGCTGGAACTTCTGTAAGTAATCACCACGTCCCAGAAGGCGTAGGGATAGCAACAAATAACGTAGCGGAATATCGAGCTGTGATTTTGGGAATGAGACACGCTCTTAAGAAAGGGTTTAAACACATCCGGGTTTTAGGAGATCCCAAACTCGTCTGTTTGCAGAGGCAAGGGAGCTCAAGGATAGATTTTCTACGTTCCGAATTGATCACGTGCTCAGGGTATAATATACGATTAAATTCCGTGTTTGGGTGGAAGTATATAATCCATAGGGTGGAAGTATTCCAAGCCGTGTCTCCTGAGATTTTCTTGCCAAACTGCAGTTTCATGAGGTGGTGGCAAGATTATAATAAGATTATGGGAAGCTCCTATAACTCGGATCTAACCGAGTTAATGAGGGCCGGAAATATCTACACCCCTCTCACCTTCGATCACTACAGGCAATTGTGTCCAGATTTCAGCCAAATCATTCAAGACACTATAGTCGTGAAGCAGATCACAAGCCCAACCACTGCCGTCGGAGCTCTCCGCTTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGACACCTCTGTTCTGGCCTCCTCCACTCATTTCAACACAGCCGACCGTGACTCTGAAATCAACCGCTCTCTCCCTGGAGATGCCTTCGACCACATAGTTCGTGTCAAAACTGCTCTTGAGCTAGCTTGCCCTAACACCGTCTCTTGCTCCGACATTCTCGCCGTCGCAACTCGTGACCTCCTCACCATGATCGGCGGACCTTACTACAAAGTCTTATTAGGCCTAAAAGATTCTCTCACCTCAAACATTTCCTCCGTCACCAGAGATCCTCTGTTACCGATTATGTCCGTTTCAGAACTCATCGCCCTTTTCAGATTGAGGATTTACAATCGAAGAAATGGTAGCCTTATCCAGCGCTCACACGATCGGTCTCTCCAACTGCAATCAATTCAGCAGAGACATTTTCAGTTTCAGCAAATTAATTCAGATCAATCCGGAACTAAACCGTAG 1212 46.04 MGLLWAWAQYRSMLLSLILAYSFPSKVFRRQKQSIVVLYAEEKDAFYVVRQGDAIGIYKNPSDCQAQAGTSVSNHHVPEGVGIATNNVAEYRAVILGMRHALKKGFKHIRVLGDPKLVCLQRQGSSRIDFLRSELITCSGYNIRLNSVFGWKYIIHRVEVFQAVSPEIFLPNCSFMRWWQDYNKIMGSSYNSDLTELMRAGNIYTPLTFDHYRQLCPDFSQIIQDTIVVKQITSPTTAVGALRFFFHDCFPNGCDTSVLASSTHFNTADRDSEINRSLPGDAFDHIVRVKTALELACPNTVSCSDILAVATRDLLTMIGGPYYKVLLGLKDSLTSNISSVTRDPLLPIMSVSELIALFRLRIYNRRNGSLIQRSHDRSLQLQSIQQRHFQFQQINSDQSGTKP 403
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 9296925 9299006 - Conep18aG0139400.1 Cone18ag1350 458311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1350 403 Pfam Reverse transcriptase-like 84 127 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Cone18ag1350 403 SUPERFAMILY Heme-dependent peroxidases 207 359 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 PANTHER - 207 359 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 Gene3D - 50 164 IPR036397 GO:0003676(InterPro)
Cone18ag1350 403 SUPERFAMILY Ribonuclease H-like 77 131 IPR012337 -
Cone18ag1350 403 Pfam Peroxidase 233 359 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 Pfam Enhanced disease susceptibility 1 protein EP domain 162 196 IPR041266 -
Cone18ag1350 403 Gene3D - 207 355 - -
Cone18ag1350 403 PRINTS Plant peroxidase signature 216 235 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 PRINTS Plant peroxidase signature 240 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 PRINTS Plant peroxidase signature 300 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 PRINTS Plant peroxidase signature 281 294 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 PRINTS Plant peroxidase signature 319 334 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 ProSiteProfiles Plant heme peroxidase family profile. 206 375 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 PRINTS Haem peroxidase superfamily signature 301 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 PRINTS Haem peroxidase superfamily signature 238 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone18ag1350 403 PRINTS Haem peroxidase superfamily signature 319 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0132 Cone-Chr11:595732 Cone18ag1350 Cone-Chr18:9296925 7.19E-19 dispersed
Cone18ag1350 Cone-Chr18:9296925 Cone2ag0152 Cone-Chr2:793258 2.87E-60 dispersed
Cone11ag0131 Cone-Chr11:593158 Cone18ag1350 Cone-Chr18:9296925 1.42E-18 wgd
Cone12ag0628 Cone-Chr12:5646784 Cone18ag1350 Cone-Chr18:9296925 3.41E-13 wgd
Cone13ag0121 Cone-Chr13:713201 Cone18ag1350 Cone-Chr18:9296925 7.25E-54 wgd
Cone18ag1350 Cone-Chr18:9296925 Cone19ag0123 Cone-Chr19:688592 3.78E-54 wgd
Cone18ag1350 Cone-Chr18:9296925 Cone8ag0643 Cone-Chr8:6364683 9.60E-14 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1350 K00430 - csv:105435603 206.068