Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone18ag1350 | ATGGGTCTACTTTGGGCTTGGGCCCAATATCGCTCAATGTTATTGTCCTTGATCTTGGCTTATTCCTTTCCTTCAAAAGTATTCAGAAGACAAAAACAGAGCATAGTGGTTCTGTATGCGGAAGAGAAGGATGCTTTCTACGTTGTACGACAGGGGGATGCAATCGGAATTTACAAGAATCCAAGTGACTGCCAAGCTCAAGCTGGAACTTCTGTAAGTAATCACCACGTCCCAGAAGGCGTAGGGATAGCAACAAATAACGTAGCGGAATATCGAGCTGTGATTTTGGGAATGAGACACGCTCTTAAGAAAGGGTTTAAACACATCCGGGTTTTAGGAGATCCCAAACTCGTCTGTTTGCAGAGGCAAGGGAGCTCAAGGATAGATTTTCTACGTTCCGAATTGATCACGTGCTCAGGGTATAATATACGATTAAATTCCGTGTTTGGGTGGAAGTATATAATCCATAGGGTGGAAGTATTCCAAGCCGTGTCTCCTGAGATTTTCTTGCCAAACTGCAGTTTCATGAGGTGGTGGCAAGATTATAATAAGATTATGGGAAGCTCCTATAACTCGGATCTAACCGAGTTAATGAGGGCCGGAAATATCTACACCCCTCTCACCTTCGATCACTACAGGCAATTGTGTCCAGATTTCAGCCAAATCATTCAAGACACTATAGTCGTGAAGCAGATCACAAGCCCAACCACTGCCGTCGGAGCTCTCCGCTTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGACACCTCTGTTCTGGCCTCCTCCACTCATTTCAACACAGCCGACCGTGACTCTGAAATCAACCGCTCTCTCCCTGGAGATGCCTTCGACCACATAGTTCGTGTCAAAACTGCTCTTGAGCTAGCTTGCCCTAACACCGTCTCTTGCTCCGACATTCTCGCCGTCGCAACTCGTGACCTCCTCACCATGATCGGCGGACCTTACTACAAAGTCTTATTAGGCCTAAAAGATTCTCTCACCTCAAACATTTCCTCCGTCACCAGAGATCCTCTGTTACCGATTATGTCCGTTTCAGAACTCATCGCCCTTTTCAGATTGAGGATTTACAATCGAAGAAATGGTAGCCTTATCCAGCGCTCACACGATCGGTCTCTCCAACTGCAATCAATTCAGCAGAGACATTTTCAGTTTCAGCAAATTAATTCAGATCAATCCGGAACTAAACCGTAG | 1212 | 46.04 | MGLLWAWAQYRSMLLSLILAYSFPSKVFRRQKQSIVVLYAEEKDAFYVVRQGDAIGIYKNPSDCQAQAGTSVSNHHVPEGVGIATNNVAEYRAVILGMRHALKKGFKHIRVLGDPKLVCLQRQGSSRIDFLRSELITCSGYNIRLNSVFGWKYIIHRVEVFQAVSPEIFLPNCSFMRWWQDYNKIMGSSYNSDLTELMRAGNIYTPLTFDHYRQLCPDFSQIIQDTIVVKQITSPTTAVGALRFFFHDCFPNGCDTSVLASSTHFNTADRDSEINRSLPGDAFDHIVRVKTALELACPNTVSCSDILAVATRDLLTMIGGPYYKVLLGLKDSLTSNISSVTRDPLLPIMSVSELIALFRLRIYNRRNGSLIQRSHDRSLQLQSIQQRHFQFQQINSDQSGTKP | 403 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 9296925 | 9299006 | - | Conep18aG0139400.1 | Cone18ag1350 | 458311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone18ag1350 | 403 | Pfam | Reverse transcriptase-like | 84 | 127 | IPR002156 | GO:0003676(InterPro)|GO:0004523(InterPro) | |
| Cone18ag1350 | 403 | SUPERFAMILY | Heme-dependent peroxidases | 207 | 359 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | PANTHER | - | 207 | 359 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | Gene3D | - | 50 | 164 | IPR036397 | GO:0003676(InterPro) | |
| Cone18ag1350 | 403 | SUPERFAMILY | Ribonuclease H-like | 77 | 131 | IPR012337 | - | |
| Cone18ag1350 | 403 | Pfam | Peroxidase | 233 | 359 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | Pfam | Enhanced disease susceptibility 1 protein EP domain | 162 | 196 | IPR041266 | - | |
| Cone18ag1350 | 403 | Gene3D | - | 207 | 355 | - | - | |
| Cone18ag1350 | 403 | PRINTS | Plant peroxidase signature | 216 | 235 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | PRINTS | Plant peroxidase signature | 240 | 260 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | PRINTS | Plant peroxidase signature | 300 | 310 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | PRINTS | Plant peroxidase signature | 281 | 294 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | PRINTS | Plant peroxidase signature | 319 | 334 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | ProSiteProfiles | Plant heme peroxidase family profile. | 206 | 375 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | PRINTS | Haem peroxidase superfamily signature | 301 | 318 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | PRINTS | Haem peroxidase superfamily signature | 238 | 252 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cone18ag1350 | 403 | PRINTS | Haem peroxidase superfamily signature | 319 | 331 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag0132 | Cone-Chr11:595732 | Cone18ag1350 | Cone-Chr18:9296925 | 7.19E-19 | dispersed | |
| Cone18ag1350 | Cone-Chr18:9296925 | Cone2ag0152 | Cone-Chr2:793258 | 2.87E-60 | dispersed | |
| Cone11ag0131 | Cone-Chr11:593158 | Cone18ag1350 | Cone-Chr18:9296925 | 1.42E-18 | wgd | |
| Cone12ag0628 | Cone-Chr12:5646784 | Cone18ag1350 | Cone-Chr18:9296925 | 3.41E-13 | wgd | |
| Cone13ag0121 | Cone-Chr13:713201 | Cone18ag1350 | Cone-Chr18:9296925 | 7.25E-54 | wgd | |
| Cone18ag1350 | Cone-Chr18:9296925 | Cone19ag0123 | Cone-Chr19:688592 | 3.78E-54 | wgd | |
| Cone18ag1350 | Cone-Chr18:9296925 | Cone8ag0643 | Cone-Chr8:6364683 | 9.60E-14 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone18ag1350 | K00430 | - | csv:105435603 | 206.068 |