Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1359 ATGAAGGAGAAGAGTGAAAGTGGTGGTGGTGGTGGAGGTTATGTAAGGGCGGATCAGATAGATCTGAAAAGCTTGGATGAACAACTACAGAGGCATCTAACTAGAGCCTTGACTATGGAGAAGAACAAGAACAAGGCAGCAGAAGAAGCAGAGGAAGAAGCAGCAGCACAGCAAATTGTAGTGCAAAAGAGGAATAAAACCGCAAGGCAAGAATGGGAGATTGACCCTTCAAAATTGATCATCAAATCTGTCATAGCTCGTGGCACTTTTGGCACTGTTCATCGTGGAATCTATGATGGTCTAGATGTTGCTGTTAAACTTCTTGATTGGGGTGAAGAAGGTCATAGATCAGAGGCCGAAATAGCTTCTCTTAGAGCGGCTTTCATTCAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTAAATAAGTTCATAGGTGCAACAATGGGCTCATCGGGGCTACATTTACAAACCGAAAACGGCCAAATAGGCATGCCAAGCAATGTTTGTTGTGTGGTCATTGAATATTGTCCTGGTGGTGCATTAAAATCTTACCTCATAAAGAACCGGAGAAGAAAGCTCGCTTTCAAAGTAGTTGTCCAACTAGCTCTAGACCTTGCAAGAGGGTTGAGTTATCTTCACTCGAAGAAGATAGTCCATAGAGATGTTAAAACCGAAAACATGCTTCTGGATAAAACACGTACGCTCAAAATTGCGGATTTTGGCGTTGCTCGTATTGAGGCCTCAAATCCTCATGACATGACCGGTGAAACCGGAACTTTAGGCTACATGGCTCCAGAGGTTCTTAATGGAAGTCCGTATAATAGAAAATGTGATGTGTATAGTTTTGGAATCTGCTTATGGGAGATATATTGTTGTGACATGCCTTATCCTGACCTTAGCTTCTCCGAAGTGACATCAGCAGTTGTCCGTCAGAATCTTAGGCCGGAGATTCCTCGTTGTTGCCCGGGTTCTCTTGCAATGGTAATGAAGAGATGTTGGGATGCTAATCTGGACAAGCGGCCGGAGATGGATGATGTGGTGGCCATGTTGGAAGCAATTGATACCTCTAAAGGGGGAGGTATGATCCCTCTTGATCAGCCTCAAGGTTGTTTCTGTTTCCGTAAGTACCGAGGCCCGTGA 1149 44.39 MKEKSESGGGGGGYVRADQIDLKSLDEQLQRHLTRALTMEKNKNKAAEEAEEEAAAQQIVVQKRNKTARQEWEIDPSKLIIKSVIARGTFGTVHRGIYDGLDVAVKLLDWGEEGHRSEAEIASLRAAFIQEVAVWHKLDHPNVNKFIGATMGSSGLHLQTENGQIGMPSNVCCVVIEYCPGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSKKIVHRDVKTENMLLDKTRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGSPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPGSLAMVMKRCWDANLDKRPEMDDVVAMLEAIDTSKGGGMIPLDQPQGCFCFRKYRGP 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9340188 9343506 - Conep18aG0140300.1 Cone18ag1359 458320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1359 382 FunFam Serine/threonine-protein kinase HT1 179 364 - -
Cone18ag1359 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1359 382 FunFam Kinase suppressor of Ras 1 68 163 - -
Cone18ag1359 382 ProSiteProfiles Protein kinase domain profile. 79 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1359 382 CDD STKc_MAP3K-like 85 353 - -
Cone18ag1359 382 Gene3D Transferase(Phosphotransferase) domain 1 179 364 - -
Cone18ag1359 382 Coils Coil 22 57 - -
Cone18ag1359 382 SUPERFAMILY Protein kinase-like (PK-like) 63 353 IPR011009 -
Cone18ag1359 382 Gene3D Phosphorylase Kinase; domain 1 67 162 - -
Cone18ag1359 382 PRINTS Tyrosine kinase catalytic domain signature 324 346 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1359 382 PRINTS Tyrosine kinase catalytic domain signature 280 302 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1359 382 PRINTS Tyrosine kinase catalytic domain signature 176 189 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1359 382 PRINTS Tyrosine kinase catalytic domain signature 214 232 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1359 382 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 54 354 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cone18ag1359 382 SMART serkin_6 79 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1359 382 Pfam Protein tyrosine and serine/threonine kinase 81 352 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1359 Cone-Chr18:9340188 Cone2ag0900 Cone-Chr2:34824127 1.11E-229 dispersed
Cone11ag0120 Cone-Chr11:540829 Cone18ag1359 Cone-Chr18:9340188 9.34E-268 wgd
Cone13ag0137 Cone-Chr13:792263 Cone18ag1359 Cone-Chr18:9340188 8.52E-63 wgd
Cone16ag0263 Cone-Chr16:2923665 Cone18ag1359 Cone-Chr18:9340188 1.79E-66 wgd
Cone16ag0108 Cone-Chr16:632936 Cone18ag1359 Cone-Chr18:9340188 1.66E-67 wgd
Cone18ag1359 Cone-Chr18:9340188 Cone19ag0138 Cone-Chr19:746743 4.24E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82353 PF01529 DHHC 1.10E-35 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1359 - - - 0.0