Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1361 ATGCTTGCTCTGAAATTTACTCCGTCATCGCCATTGCTTGGAAGCGGTTTCTCTTCTTCATTTTGGGGCAGAGATCTGTGTTTCACCCTCATTGGAGGTTCGGTGAGCAGTTCAAAAGTTATGGCTCCGTTTAATGGTGGAGGTTTTAGGATTTTCGCTTTGTCAAATGGTGGTTCTTCTTCTTCTTCTTCTTCTTCGTTTAAGATGAACCTCAACGAGTACATGGTTACTCTCGAAAAGCCTCTCGGTATTCGGTTTGCGCTCTCGATCGACGGGAAAATCTTTGTTCACTCACTTAAAAAAGGGGGTAATGCTGAGAAGTCAAGGATAATAATGGTGGGTGACACTTTGAAGAAGGCTAGTGATTCGTCTGGCAGCAAGCTTATTGAGATCATGAATTTCACTGATACAGAGAAGATGCTGAAGGAGAAATCAGGATCTCTTAGCATGGTTCTGGAAAGACCATTCACTCCCTTTCCAATTCAACAACTTCCTCCTTTAAGTGATTATGATATCTTATTTAATAGAGGTCGAGTATCTATTGCCACTTGGAACAATGATATATTGGCTTCAAATTGGCGAACGTACTCTGAAAGTAGTGGGAAGTCTGGGTTTGTGATTTTCTCCTCAAATCTTGCCTCAGTACGAGGATGGAAAGTATTGAACGAACAAAATGGAGCTGTAAGATCACAAAAGCAAAGGAAAAGTTTGTCCCCTCTGATTAGTCACGTTGTTAGCATCTTATCAGATGAGGAGTCAGGAGATGGAGAGTGGGGTCATGGGAGCTTTCCGCTCGAGGAATATATTAAAGCACTGGAAAGGTCTAAGGGTGAACTGTACTATGATCACTCTCTTGGTATGCGCTTCAGTAAGATTACAGAGCAGATATATGTCGGATCATGTGTGCAGACTGAAGATGATGTGGAGACTTTATCAAACAAGGGAATCACTGCCATATTAAATTTTCAAAGTGGAATTGAAACAGAAAATTGGGGAGTCAATTCCCAGTTAATCAATGACTCATGCCAAAGATTTAATATACTCATGATCAATTATCCAATAAGGGAGCGAGATTCTTATGATTTGAGGAAGAAGCTACCATTTTGTGCTGGTCTCCTACTACGCTTGTTAAAAAATAATCACCGTGTTTTTGTCACTTGTACTACTGGCTTTGATCGATCTCCTGCTTCTGTAATTGCGTACCTGCACTGGATGACCGATACTTCCCTCCACGCAGCTTATAATTTTGTCACCAGTTTGCATTTATGCAAGCCTGACAGGGCAGCTATTGCTTCAGCTACATGGGATCTCATATCTATGGTGGAAAATGGAAGGCGTGATGGGCCTCCTACACATGTTGTGACCTTCGTGTGGAATGGACACGAGGGGCAGGATGTAAATTTGGTAGGAGATTTTACTGGAAACTGGAAAGAACCTGTAAAGGCAACCCACAAGGGTGGACCAAGATATGAAGTAGAAGTGAGGCTTGTACAAGGAAAGTACTACTACAAGTATGTTGTTAATGGGCAATGGCAGCATTCACCAGCTTCACCCTCAGAAAGGGACGAAAGGGGGAATGTTAACAATGTAATTCGTATTGGCGACACTGCTAGTGTGAGGCCTTCTGTTCACAGGCAAGAGAAAGATGCTAACATTATAAAGGTGATTGAGAGGCCACTGACTGAAAACGAACGCCTCATGCTGGCAAAAGCTGCTCGTTGCATTGCATTTTCTGTTTGTCCCATCAGACTAGCTCCCAAGTAG 1764 42.57 MLALKFTPSSPLLGSGFSSSFWGRDLCFTLIGGSVSSSKVMAPFNGGGFRIFALSNGGSSSSSSSSFKMNLNEYMVTLEKPLGIRFALSIDGKIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGSKLIEIMNFTDTEKMLKEKSGSLSMVLERPFTPFPIQQLPPLSDYDILFNRGRVSIATWNNDILASNWRTYSESSGKSGFVIFSSNLASVRGWKVLNEQNGAVRSQKQRKSLSPLISHVVSILSDEESGDGEWGHGSFPLEEYIKALERSKGELYYDHSLGMRFSKITEQIYVGSCVQTEDDVETLSNKGITAILNFQSGIETENWGVNSQLINDSCQRFNILMINYPIRERDSYDLRKKLPFCAGLLLRLLKNNHRVFVTCTTGFDRSPASVIAYLHWMTDTSLHAAYNFVTSLHLCKPDRAAIASATWDLISMVENGRRDGPPTHVVTFVWNGHEGQDVNLVGDFTGNWKEPVKATHKGGPRYEVEVRLVQGKYYYKYVVNGQWQHSPASPSERDERGNVNNVIRIGDTASVRPSVHRQEKDANIIKVIERPLTENERLMLAKAARCIAFSVCPIRLAPK 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9351572 9358729 - Conep18aG0140500.1 Cone18ag1361 458322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1361 587 Gene3D Protein tyrosine phosphatase superfamily 281 568 IPR029021 -
Cone18ag1361 587 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 59 581 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Cone18ag1361 587 Pfam Glycogen recognition site of AMP-activated protein kinase 454 535 IPR032640 -
Cone18ag1361 587 ProSiteProfiles PDZ domain profile. 75 156 IPR001478 GO:0005515(InterPro)
Cone18ag1361 587 ProSiteProfiles Dual specificity protein phosphatase domain profile. 288 443 IPR020422 GO:0006470(InterPro)
Cone18ag1361 587 SMART dsp_5 288 447 IPR020422 GO:0006470(InterPro)
Cone18ag1361 587 SUPERFAMILY PDZ domain-like 60 161 IPR036034 GO:0005515(InterPro)
Cone18ag1361 587 CDD DSP_laforin-like 287 432 IPR045204 GO:0019203(InterPro)
Cone18ag1361 587 Pfam Dual specificity phosphatase, catalytic domain 296 419 IPR000340 GO:0016311(InterPro)
Cone18ag1361 587 Gene3D Immunoglobulins 441 538 IPR013783 -
Cone18ag1361 587 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 281 420 IPR029021 -
Cone18ag1361 587 SUPERFAMILY E set domains 450 534 IPR014756 -
Cone18ag1361 587 CDD E_set_AMPKbeta_like_N 454 533 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1361 Cone-Chr18:9351572 Cone5ag0384 Cone-Chr5:1640964 1.14E-29 dispersed
Cone11ag0116 Cone-Chr11:520866 Cone18ag1361 Cone-Chr18:9351572 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1361 - - - 0.0