Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1380 ATGGGATCTGGAAATGGGTTTTCCGATGCTAAGTGGCTTATCGATCCTAAACATCTCTTTGTTGGTCCCAGAATTGGGGAGGGTGCTCATGCTAAGGTCTATGAAGGAAAATACAAGAATCAAACAGTCGCTATAAAAATGGTTCGTAGGGGTGCAACCGCAGAAGAGATATCCCGGAGAGAAGCCCGGTTTGATCGAGAGGTTGCAATGTTATCCAGAGTACAACACAAGAACCTAGTGAAGTTTATAGGTGCTTGTAAGGATCCGGTTATGGTGATAGTAACAGAGCTTCTATCGGGTGGGACGCTACGTAAATACTTGTTGAATATGCGTCCGAATCGGTTGGACGTTCACATTGCGATTGGGTTTGCACTCGATATTGCTCGAGCAATGGAGTGCTTACATTCTCACGGGATCATTCACCGTGACCTTAAACCAGAGAACTTGATCTTGACGGGTGACCATAATACAGTTAAACTTGCGGATTTTGGTTTGGCCAGGGAAGAGTCGGTCACGGAGATGATGACTGCCGAAACGGGGACATATCGATGGATGGCTCCAGAGCTTTACAGTACGGTTACCCTTAAACATGGGGAGAAGAAGCATTACAATCACAAGGTGGATGCCTACAGCTTCGCCATTGTCTTGTGGGAGCTCATCCATAACAAGTTGCCATTCGAAGGCATGTCCAATCTACAGGCCGCATATGCCGCTGCTTTTAAGAACATGAGGCCTACTGCAGAGAACCTTCCCGAAGATTTGGCTTCGATCGTGACATCGTGTTGGAAAGAGGATCCAAACACTCGGCCAAACTTCACTCAGATAATACAAATGCTTTTGCAGTATCTCTCTACGGTTTCACCATGTCAGCCCGTTATTCCACCTAGAATTCATTCTTCAGAAAACGTCATCTTCCCACCGGAATCACCCGGTACAAATTCTTTGATGGCTAAAAGGGATTACTCGGGAGAGAACCCTAATAGCACCACCGAAGACCAACCGAAAAGTTTGTTCTTTTGCTTTGACAAATGTTACTGA 1038 45.86 MGSGNGFSDAKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKMVRRGATAEEISRREARFDREVAMLSRVQHKNLVKFIGACKDPVMVIVTELLSGGTLRKYLLNMRPNRLDVHIAIGFALDIARAMECLHSHGIIHRDLKPENLILTGDHNTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNMRPTAENLPEDLASIVTSCWKEDPNTRPNFTQIIQMLLQYLSTVSPCQPVIPPRIHSSENVIFPPESPGTNSLMAKRDYSGENPNSTTEDQPKSLFFCFDKCY 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9463826 9466294 + Conep18aG0142700.1 Cone18ag1380 458341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1380 345 SUPERFAMILY Protein kinase-like (PK-like) 6 304 IPR011009 -
Cone18ag1380 345 CDD STKc_MAP3K-like 25 279 - -
Cone18ag1380 345 PANTHER SERINE-THREONINE PROTEIN KINASE 13 280 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone18ag1380 345 Pfam Protein tyrosine and serine/threonine kinase 24 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1380 345 PIRSF TyrPK_CSF1-R 107 337 - -
Cone18ag1380 345 PIRSF TyrPK_CSF1-R 8 119 - -
Cone18ag1380 345 ProSiteProfiles Protein kinase domain profile. 19 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1380 345 Gene3D Phosphorylase Kinase; domain 1 7 98 - -
Cone18ag1380 345 FunFam Kinase suppressor of Ras 1 8 98 - -
Cone18ag1380 345 PRINTS Tyrosine kinase catalytic domain signature 207 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1380 345 PRINTS Tyrosine kinase catalytic domain signature 250 272 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1380 345 PRINTS Tyrosine kinase catalytic domain signature 95 108 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1380 345 PRINTS Tyrosine kinase catalytic domain signature 133 151 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1380 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag1380 345 MobiDBLite consensus disorder prediction 308 331 - -
Cone18ag1380 345 FunFam serine/threonine-protein kinase HT1 100 299 - -
Cone18ag1380 345 ProSitePatterns Protein kinases ATP-binding region signature. 25 46 IPR017441 GO:0005524(InterPro)
Cone18ag1380 345 SMART serkin_6 19 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag1380 345 Gene3D Transferase(Phosphotransferase) domain 1 99 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0440 Cone-Chr10:2045302 Cone18ag1380 Cone-Chr18:9463826 8.20E-102 dispersed
Cone13ag0169 Cone-Chr13:1053186 Cone18ag1380 Cone-Chr18:9463826 5.08E-198 dispersed
Cone13ag1446 Cone-Chr13:10362427 Cone18ag1380 Cone-Chr18:9463826 1.50E-47 dispersed
Cone18ag1380 Cone-Chr18:9463826 Cone3ag0473 Cone-Chr3:2302328 2.82E-141 dispersed
Cone11ag0095 Cone-Chr11:406377 Cone18ag1380 Cone-Chr18:9463826 5.84E-177 wgd
Cone18ag1380 Cone-Chr18:9463826 Cone19ag0166 Cone-Chr19:953893 2.38E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82357 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1380 - - - 0.0