Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1406 ATGGCTTTGGTTTCAATAAGGTATCTTGTTATGCAGGCCCCTCCATTTTTGTCATCAGCCTTTATCTTGAAGAAAGATGATATCGGATCTGCCGGGAGTAAGTCCCTCAGAGCACTTGCCCTCATTGGAGCAGGTGTCTCAGGAATCTTGAGTTTTGCAACAATAGCATCTGCAGATGAGGCTGAACATGGTTTGGAGTGTCCAAACTACCCCTGGCCCCATGCTGGTATTCTTAGCTCATATGACCATGCTTCGATTCGTCGTGGTCATCAGGTTTATACACAAGTTTGTGCATCTTGTCATTCTATGTCTTTGATATCGTACCGTGATTTGGTTGGCGTCGCCTATACCGAAGAGGAGACAAAGGCCATGGCGGCTGAGATTGAGGTGGTTGATGGGCCCAATGATGAGGGTGAGATGTTTACTCGCCCCGGTAAGCTAAGTGATCGGTTTCCTCAACCCTATGCAAATGAACAAGCAGCTAGGTTTGCTAATGGAGGGGCCTATCCTCCAGATCTAAGTCTCATTACCAAAGCTCGCCATAATGGTCAGAACTACGTATTTTCTCTGCTTACTGGTTACCATGACCCCCCAGCTGGTGTTTCGATCCGAGATGGTTTGCACTATAATCCATATTTCCCTGGGGGTGCTATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTCGAGTACGAAGATGGTACACCTGCAACTGAAGCTCAGATGGGGAAAGATGTTGTATCATTTTTGTCTTGGGCTGCAGAACCCGAAATGGAAGAGAGGAAACTGATGGGATTCAAATGGATATTCGTACTCTCTCTTGCTCTACTTCAGGCTGCCTACTATAGGCGCCTGAAGTGGTCAGTTTACAAGTCCCGCAAGATTGTGCTTGATGTGGTTAACTAG 906 46.69 MALVSIRYLVMQAPPFLSSAFILKKDDIGSAGSKSLRALALIGAGVSGILSFATIASADEAEHGLECPNYPWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYHDPPAGVSIRDGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVYKSRKIVLDVVN 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9566922 9568586 - Conep18aG0145300.1 Cone18ag1406 458367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1406 301 Gene3D - 61 256 IPR036909 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 Pfam Cytochrome C1 family 72 288 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 256 300 IPR021157 -
Cone18ag1406 301 Gene3D - 257 300 - -
Cone18ag1406 301 FunFam Cytochrome c1, heme protein, mitochondrial 257 301 - -
Cone18ag1406 301 FunFam Cytochrome c1, heme protein 61 256 - -
Cone18ag1406 301 PRINTS Cytochrome C1 signature 217 236 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 PRINTS Cytochrome C1 signature 237 256 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 PRINTS Cytochrome C1 signature 168 192 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 PRINTS Cytochrome C1 signature 70 89 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 PRINTS Cytochrome C1 signature 90 109 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 PRINTS Cytochrome C1 signature 135 155 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 PRINTS Cytochrome C1 signature 206 217 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 PRINTS Cytochrome C1 signature 256 271 IPR002326 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 ProSiteProfiles Cytochrome c family profile. 84 191 IPR009056 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 SUPERFAMILY Cytochrome c 65 255 IPR036909 GO:0009055(InterPro)|GO:0020037(InterPro)
Cone18ag1406 301 PANTHER CYTOCHROME C1 29 299 IPR002326 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0009055(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0071 Cone-Chr11:308320 Cone18ag1406 Cone-Chr18:9566922 1.20E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1406 K00413 - mdm:103442156 541.962