Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1424 ATGCCTGAGGAGACGGTGGCGATAGAATACATGATGGAGAAAGCGTCTGGACCTCACTTCTCGGGCCTCCGACTCGACGGCCTTCTCAAATCTCCGCCTTCTTCTTCTTCGTCTTCTCCAGCTCACCGCTCATCTTTTTCTTCTGCTTCTGGTCCGATCGAAGCCAGTTCTCCCGTTGAACCTTTCGTCATCGGTGTTTCGGGAGGTACTGCCTCAGGGAAGACGACGGTGTGCGATATGATCATCCAGCAGCTTCATGATCACAGGGTTGTGCTTGTCAATCAGGATTCGTTTTACCGTGGACTGACACCAGAAGAATCAGCACGCGTACACGAGTATAACTTTGATCATCCTGATGCTTTTGACACTGAGCAACTTCTGGATTGTGCTCAAAAGCTCAAAAGCGGGCAGTCTTACCAAGTTCCAATCTATGACTTTAAGAACCATCGCCGTCGTTCAGATAGCTTCCGACAGGTAAATGCGGCTGATGTTATCATCCTGGAGGGAATTCTGGTTTTTCATGATCCCCGTGTTCGCAATCTGATGAATATGAAGATATTTGTAGACACAGCCTCCAGGTGTTCTGGAGTTGAAAGGAGTTCACACGCACATATGATCATAAATCTAACTTCTGGCTTGCAATTGCTCTTAGATGCTGATGTGAGGCTTGCTCGTAGAATAAGACGTGACATTGTAGAGAGGGGTAGGGACATTAACTCTGTTCTTGAACAGTATGCAAAGTTTGTGAAGCCTGCTTTTGATGACTTTGTTCTGCCATCAAAGAAGTACGCTGATGTGATTATACCTAGGGGAGGTGAGAATCACGTTGCTATCAATTTGATTGTGCAACATATACACACAAAGCTTGGTCAGCATGACCTCTGCAAGATATATCCAAATGTTACTGTTATCCAGTCAACATTTCAGATACGAGGGATGCATACACTAATTCGGGACAAGGACATATCAAAGCATGACTTTGTCTTTTATTCGGATCGTCTTATTCGTTTGGTTGTGGAACATGGCCTCGGCCATTTGCCATTCACTGAAAAGCAAGTGGTCACTCCAACAGGATCTCTGTACACAGGGGTAGACTTCTGCAAGAAATTATGCGGGGTTTCCATTGTTCGAAGTGGTGAAAGCATGGAGAATGCCTTGCGCGCATGCTGTAAGGGAATAAAAATTGGGAAGATTCTAATACACCGTGATGGAGACAATGGGCAGCAGCTAATCTATGAGAAGCTGCCTAAGGATATTTCAGAACGGCATGTCCTTCTTCTCGATCCTGTTCTTGCTACAGGTAACTCTGCTAACCAAGCAATTGAGCTACTTGTACAGAAAGGAGTCCCTGAATCACACATTATATTCCTCAACCTAATCTCAGCGCCTGAGGGAATCCATTGCGTTTGCAAACGATATCCAACCTTGAAAATCGTCACCTCAGAGATTGATGTTGCATTGAACGAAGAATATCGAGTCATTCCCGGCATGGGTGAGTTTGGGGATCGCTACTTTGGTACTGATGATTGA 1530 45.36 MPEETVAIEYMMEKASGPHFSGLRLDGLLKSPPSSSSSSPAHRSSFSSASGPIEASSPVEPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTPEESARVHEYNFDHPDAFDTEQLLDCAQKLKSGQSYQVPIYDFKNHRRRSDSFRQVNAADVIILEGILVFHDPRVRNLMNMKIFVDTASRCSGVERSSHAHMIINLTSGLQLLLDADVRLARRIRRDIVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGENHVAINLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDKDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSLYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGQQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLVQKGVPESHIIFLNLISAPEGIHCVCKRYPTLKIVTSEIDVALNEEYRVIPGMGEFGDRYFGTDD 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9640026 9643528 + Conep18aG0147100.1 Cone18ag1424 458385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1424 509 FunFam Uridine kinase 292 507 - -
Cone18ag1424 509 Pfam Phosphoribulokinase / Uridine kinase family 217 276 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Cone18ag1424 509 Pfam Phosphoribulokinase / Uridine kinase family 63 191 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Cone18ag1424 509 CDD UMPK 63 288 IPR000764 -
Cone18ag1424 509 SUPERFAMILY PRTase-like 291 508 IPR029057 -
Cone18ag1424 509 Gene3D - 59 291 IPR027417 -
Cone18ag1424 509 Gene3D - 292 507 IPR029057 -
Cone18ag1424 509 PRINTS Uridine kinase signature 136 151 - -
Cone18ag1424 509 PRINTS Uridine kinase signature 61 78 - -
Cone18ag1424 509 PRINTS Uridine kinase signature 91 102 - -
Cone18ag1424 509 MobiDBLite consensus disorder prediction 23 55 - -
Cone18ag1424 509 MobiDBLite consensus disorder prediction 30 54 - -
Cone18ag1424 509 PANTHER URIDINE KINASE 58 436 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Cone18ag1424 509 Pfam Uracil phosphoribosyltransferase 306 507 - -
Cone18ag1424 509 CDD PRTases_typeI 365 467 IPR000836 -
Cone18ag1424 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 281 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1424 K00876 - - vvi:100257790 815.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1356 Cone-Chr13:9947103 Cone18ag1424 Cone-Chr18:9640026 2.88E-16 dispersed
Cone18ag1424 Cone-Chr18:9640026 Cone9ag0002 Cone-Chr9:16407 5.01E-77 dispersed
Cone16ag0986 Cone-Chr16:9734631 Cone18ag1424 Cone-Chr18:9640026 6.34E-299 wgd
Cone18ag1424 Cone-Chr18:9640026 Cone2ag0051 Cone-Chr2:253574 5.15E-269 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone20ag0355 . 33 192 PRT Gene Family AT1G80050 75.0 3.2e-64 241.9
Cone6ag0691 . 30 180 PRT Gene Family AT1G80050 77.5 9.3e-64 240.4
Cone17ag1015 . 33 192 PRT Gene Family AT1G80050 75.0 3.5e-63 238.4
Cone12ag0366 . 30 180 PRT Gene Family AT1G80050 75.5 1.5e-61 233.0
Cone9ag0694 . 30 180 PRT Gene Family AT1G80050 76.2 1.9e-61 232.6
Cone20ag0230 . 107 256 PRT Gene Family AT1G80050 72.0 1.7e-57 219.5
Cone20ag0355 . 1 148 PRT Gene Family AT5G11160 81.8 2.6e-64 242.3
Cone17ag1015 . 1 148 PRT Gene Family AT5G11160 81.8 3.4e-64 241.9
Cone9ag0694 . 8 145 PRT Gene Family AT5G11160 74.6 7.5e-56 214.2
Cone20ag0230 . 85 222 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cone12ag0366 . 8 145 PRT Gene Family AT5G11160 73.2 1.8e-54 209.5
Cone6ag0691 . 8 145 PRT Gene Family AT5G11160 73.9 2.4e-54 209.1
Cone20ag0230 . 78 256 PRT Gene Family AT1G27450 82.7 7.4e-81 297.4
Cone12ag0366 . 1 180 PRT Gene Family AT1G27450 73.3 1.6e-72 269.6
Cone9ag0694 . 7 180 PRT Gene Family AT1G27450 73.6 3.7e-72 268.5
Cone6ag0691 . 7 180 PRT Gene Family AT1G27450 73.6 1.4e-71 266.5
Cone20ag0355 . 11 183 PRT Gene Family AT1G27450 70.5 2.7e-67 252.3
Cone17ag1015 . 11 183 PRT Gene Family AT1G27450 69.9 3.0e-66 248.8
Cone3ag1203 . 83 568 PRT Gene Family AT2G16570 83.2 1.7e-237 819.3
Cone12ag1199 . 77 559 PRT Gene Family AT2G16570 82.3 1.1e-231 800.0
Cone8ag1246 . 71 556 PRT Gene Family AT2G16570 80.4 4.2e-228 788.1
Cone3ag1203 . 86 568 PRT Gene Family AT4G34740 84.3 1.5e-238 822.8
Cone12ag1199 . 41 559 PRT Gene Family AT4G34740 77.4 2.5e-228 788.9
Cone8ag1246 . 74 556 PRT Gene Family AT4G34740 80.0 1.4e-226 783.1
Cone12ag1199 . 10 532 PRT Gene Family AT4G38880 69.3 5.1e-199 691.4
Cone8ag1246 . 47 529 PRT Gene Family AT4G38880 71.3 7.3e-198 687.6
Cone3ag1203 . 54 537 PRT Gene Family AT4G38880 71.6 3.1e-196 682.2
Cone20ag0230 . 78 256 PRT Gene Family AT1G27450 82.7 7.4e-81 297.4
Cone12ag0366 . 1 180 PRT Gene Family AT1G27450 73.3 1.6e-72 269.6
Cone9ag0694 . 7 180 PRT Gene Family AT1G27450 73.6 3.7e-72 268.5
Cone6ag0691 . 7 180 PRT Gene Family AT1G27450 73.6 1.4e-71 266.5
Cone20ag0355 . 11 183 PRT Gene Family AT1G27450 70.5 2.7e-67 252.3
Cone17ag1015 . 11 183 PRT Gene Family AT1G27450 69.9 3.0e-66 248.8
Cone20ag0355 . 33 192 PRT Gene Family AT1G80050 75.0 3.2e-64 241.9
Cone6ag0691 . 30 180 PRT Gene Family AT1G80050 77.5 9.3e-64 240.4
Cone17ag1015 . 33 192 PRT Gene Family AT1G80050 75.0 3.5e-63 238.4
Cone12ag0366 . 30 180 PRT Gene Family AT1G80050 75.5 1.5e-61 233.0
Cone9ag0694 . 30 180 PRT Gene Family AT1G80050 76.2 1.9e-61 232.6
Cone20ag0230 . 107 256 PRT Gene Family AT1G80050 72.0 1.7e-57 219.5
Cone12ag0366 . 1 97 PRT Gene Family AT4G22570 84.7 2.1e-43 172.2
Cone6ag0691 . 6 97 PRT Gene Family AT4G22570 87.0 2.7e-43 171.8
Cone9ag0694 . 6 97 PRT Gene Family AT4G22570 84.8 1.3e-42 169.5
Cone20ag0230 . 80 174 PRT Gene Family AT4G22570 78.9 2.8e-40 161.8
Cone17ag1015 . 11 100 PRT Gene Family AT4G22570 78.9 3.8e-37 151.4
Cone20ag0355 . 11 100 PRT Gene Family AT4G22570 78.9 3.8e-37 151.4
Cone12ag0366 . 1 96 PRT Gene Family AT4G12440 84.4 2.3e-41 165.2
Cone6ag0691 . 1 96 PRT Gene Family AT4G12440 83.3 3.3e-40 161.4
Cone9ag0694 . 1 96 PRT Gene Family AT4G12440 81.3 1.6e-39 159.1
Cone20ag0230 . 78 173 PRT Gene Family AT4G12440 79.2 1.1e-38 156.4
Cone17ag1015 . 4 99 PRT Gene Family AT4G12440 78.1 5.9e-37 150.6
Cone20ag0355 . 4 99 PRT Gene Family AT4G12440 78.1 5.9e-37 150.6
Cone20ag0355 . 1 148 PRT Gene Family AT5G11160 81.8 2.6e-64 242.3
Cone17ag1015 . 1 148 PRT Gene Family AT5G11160 81.8 3.4e-64 241.9
Cone9ag0694 . 8 145 PRT Gene Family AT5G11160 74.6 7.5e-56 214.2
Cone20ag0230 . 85 222 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cone12ag0366 . 8 145 PRT Gene Family AT5G11160 73.2 1.8e-54 209.5
Cone6ag0691 . 8 145 PRT Gene Family AT5G11160 73.9 2.4e-54 209.1
Cone17ag0764 . 1 143 PRT Gene Family AT1G71750 63.2 1.7e-46 183.3
Cone14ag1241 . 16 470 PRT Gene Family AT1G55810 84.2 5.0e-224 774.2
Cone15ag1266 . 16 470 PRT Gene Family AT1G55810 84.2 2.5e-223 771.9
Cone16ag0986 . 69 491 PRT Gene Family AT1G55810 78.0 2.6e-196 682.2
Cone18ag1424 . 19 509 PRT Gene Family AT1G55810 68.9 7.6e-196 680.6
Cone2ag0051 . 63 437 PRT Gene Family AT1G55810 79.2 1.4e-173 606.7
Cone9ag0002 . 16 229 PRT Gene Family AT1G55810 70.2 4.3e-82 302.8
Cone15ag1266 . 67 467 PRT Gene Family AT3G27440 77.1 2.9e-181 632.1
Cone14ag1241 . 67 467 PRT Gene Family AT3G27440 76.1 4.6e-179 624.8
Cone16ag0986 . 89 491 PRT Gene Family AT3G27440 74.4 7.3e-177 617.5
Cone18ag1424 . 80 509 PRT Gene Family AT3G27440 70.0 2.2e-173 605.9
Cone2ag0051 . 83 437 PRT Gene Family AT3G27440 74.9 6.0e-155 544.7
Cone9ag0002 . 67 229 PRT Gene Family AT3G27440 63.8 9.3e-55 211.8
Cone18ag1424 . 1 509 PRT Gene Family AT3G27190 81.0 1.1e-240 829.7
Cone16ag0986 . 1 491 PRT Gene Family AT3G27190 84.5 2.7e-239 825.1
Cone2ag0051 . 1 437 PRT Gene Family AT3G27190 83.5 2.4e-211 732.3
Cone15ag1266 . 4 469 PRT Gene Family AT3G27190 73.3 2.3e-206 715.7
Cone14ag1241 . 4 469 PRT Gene Family AT3G27190 73.1 4.3e-205 711.4
Cone9ag0002 . 3 229 PRT Gene Family AT3G27190 59.4 5.8e-69 259.2
Cone13ag1356 . 63 294 PRT Gene Family AT3G53900 76.0 3.2e-102 369.0
Cone19ag1352 . 4 285 PRT Gene Family AT3G53900 64.2 2.1e-101 366.3
Cone15ag1266 . 1 470 PRT Gene Family AT4G26510 82.5 1.6e-228 789.3
Cone14ag1241 . 1 470 PRT Gene Family AT4G26510 82.6 1.3e-227 786.2
Cone16ag0986 . 5 491 PRT Gene Family AT4G26510 72.3 2.9e-206 715.3
Cone18ag1424 . 11 509 PRT Gene Family AT4G26510 71.3 1.1e-205 713.4
Cone2ag0051 . 5 437 PRT Gene Family AT4G26510 72.7 2.0e-183 639.4
Cone9ag0002 . 1 229 PRT Gene Family AT4G26510 68.0 1.1e-83 308.1
Cone18ag1424 . 1 509 PRT Gene Family AT5G40870 81.6 1.3e-241 832.8
Cone16ag0986 . 1 491 PRT Gene Family AT5G40870 84.1 9.2e-240 826.6
Cone2ag0051 . 1 437 PRT Gene Family AT5G40870 84.7 1.9e-213 739.2
Cone15ag1266 . 3 471 PRT Gene Family AT5G40870 72.0 3.0e-206 715.3
Cone14ag1241 . 3 471 PRT Gene Family AT5G40870 71.9 1.1e-203 706.8
Cone9ag0002 . 46 229 PRT Gene Family AT5G40870 70.7 1.8e-70 264.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61