Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone18ag1436 | ATGAGTTTGGATCCAATATATCAAGAACAAGAGCATCCTCTTCTATCCGAGCCTAGAAAACAAGATGGCAATGAAGTAACTGTATTGAGTGAAGTTGAAGATGAGAAGCCTAAAGAGGTGGACTTTCTTCCGGAAAATGAACGGAAAAAACGGATAGTTCAGTTGCAAGTAAAGCTTATGCAAGCGGCTGCAGACGGAGCGGTTAGGGTGAAGAGAAGAAAGGGCCCGCACAGAGGCGGAGATTTCACTCTAGCACAAGCTTTGACAAAAGCCAACTTTTGGCTTTTGTTTTCTGCCCTTCTCTTCGGTTCCGGAACCAGACTCACTGTGATCGATAACCTCGGTCAAATAACCGAGTCTTTAAGGGATTTTGCTTATCTGAGACCGGTGGCAATGGCGGTGACCCAATCCGTAATGGTGATAGGGCACATCTTCATTGTCATGGGCTGGCCAGGAGCAATGATTGAATTCTGTACAGTCTATCATAATCTGATCAACATTCCCAGTCTTGACACCTACCCGACCAAGCTTCCTCATTGCAGTGACAAACGCTCCGTTAAAATCACCCTGATCCAAGGATGGGTCCACCGGAGAGGACGAAGAGAACGATATGGATATAATCGAATTAAGGAAACAACGACATTCCGAGCGGCAAGAGCTAAGATATCGGCACAAGAGACAACTCCGGGACAGGATTGTTTCAACTGCTTAGACCCGCCAAGGAAGATTTTTTGTCCGATCGTTGGTTGTGGTGCATGTTTAGCTTCTTTAGAGGACTTTGAAGATCATTACATCGCACGGCACACGGCTTCATGTTCAGTTTGTTCGAGAGTCTACCCCACCACACGCCTTCTCAGTATACATATATCAGAAACCCATGACTCCTTCTTCAAGGCAAAAGTTGCTCATGGCTCTGAAGTGTATGAATGCTTGGTTGAAGGTTGTGGGTTGAAGTTCAAGAGCTATAAAGGCCGGCATCAACATCTAGTGGACAAGCATGGATTTCCCACTTCGTTTGAATTTTCAAAGAAATCAAACCCTTCCAAGAAACGGAGACAGAAGGTTCAACGGAAACAAGCTACTCAGAAAAGCAAAGTAGCGTCTTCTGCAATGGAAGTAAAAACTGAAAGATGA | 1134 | 45.06 | MSLDPIYQEQEHPLLSEPRKQDGNEVTVLSEVEDEKPKEVDFLPENERKKRIVQLQVKLMQAAADGAVRVKRRKGPHRGGDFTLAQALTKANFWLLFSALLFGSGTRLTVIDNLGQITESLRDFAYLRPVAMAVTQSVMVIGHIFIVMGWPGAMIEFCTVYHNLINIPSLDTYPTKLPHCSDKRSVKITLIQGWVHRRGRRERYGYNRIKETTTFRAARAKISAQETTPGQDCFNCLDPPRKIFCPIVGCGACLASLEDFEDHYIARHTASCSVCSRVYPTTRLLSIHISETHDSFFKAKVAHGSEVYECLVEGCGLKFKSYKGRHQHLVDKHGFPTSFEFSKKSNPSKKRRQKVQRKQATQKSKVASSAMEVKTER | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 9679187 | 9681649 | - | Conep18aG0148300.1 | Cone18ag1436 | 458397 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone18ag1436 | 377 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 310 | 333 | IPR013087 | - | |
| Cone18ag1436 | 377 | SMART | c2h2final6 | 243 | 268 | IPR013087 | - | |
| Cone18ag1436 | 377 | SMART | c2h2final6 | 270 | 293 | IPR013087 | - | |
| Cone18ag1436 | 377 | SMART | c2h2final6 | 308 | 333 | IPR013087 | - | |
| Cone18ag1436 | 377 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Cone18ag1436 | 377 | MobiDBLite | consensus disorder prediction | 13 | 33 | - | - | |
| Cone18ag1436 | 377 | PANTHER | UNCHARACTERIZED | 240 | 376 | IPR039258 | - | |
| Cone18ag1436 | 377 | MobiDBLite | consensus disorder prediction | 340 | 377 | - | - | |
| Cone18ag1436 | 377 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 272 | 293 | IPR013087 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone18ag1436 | Cone-Chr18:9679187 | Cone2ag0982 | Cone-Chr2:35271259 | 2.18E-37 | dispersed | |
| Cone11ag0047 | Cone-Chr11:224458 | Cone18ag1436 | Cone-Chr18:9679187 | 1.85E-84 | transposed | |
| Cone11ag0045 | Cone-Chr11:219975 | Cone18ag1436 | Cone-Chr18:9679187 | 7.17E-60 | wgd | |
| Cone18ag1436 | Cone-Chr18:9679187 | Cone2ag0042 | Cone-Chr2:219837 | 2.66E-46 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45250 | PF00704 | Glyco_hydro_18 | 2.20E-07 | CL0058 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone18ag1436 | - | - | - | 0.0 |