Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1457 ATGGCCCGCCAGAGAAGATCTTCCACCATCAATCTTCACCTTCTCTCCCTTTCACCACCTAATACTCATTCTTCTTCCTCCATTACTACTATTACTACTACCACTACTAATCCTGCTTCTCACGTGCCCATTAATACCTCTCCAATTCTGCCTCCTGCACGTGCAATGAATCCAAGAGGGTTGAGATTTCTGTTCCAAAAGGAGCTTAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATTCTCCCAAAGAAAGCAGCAGAGGCTCATCTCCCTCGTCTGGAGAGTAAGGAGGGAATTGGTATGAACATGGACGACTTGGATGGTCTCCACGTTTGGAACTTCAAGTACAGGTTCTGGCCTAATAACAACAGCCGAATGTATGTGCTGGAAAACACAGGGGACTTTGTTAACGCTCACGGCTTGCAGCATGGAGATTCTATCATGCTGTATCAAGATAATCAAACTCAACATTATGTAATTCAGGCCAAAAAGGCTTCAGATCATCAAGAAATATATAGTGAGGTAACAACGAATATTAGTAGCAACGAGCAGCTGCAACTTGTTCACAGTTACGGTTATGAGGTTAACCAATCGGGTCTATTTTCGGACGATAACGAGCCGGCAACAATATTTATGGATGATGCAGCGGGCATGTCATTCGTCTATGATACCATCACCACCTTCTCCAATGACTCTCCGCTCGATTTTTTGGGTGGATCAATGAGCAGCTATACTACCAGAACCCCTGCAACATCTACTCATCTTGAAGGTTTTGGATCCGTCGACAATTTGTCTCTCGATGACTTTTATTAA 816 43.87 MARQRRSSTINLHLLSLSPPNTHSSSSITTITTTTTNPASHVPINTSPILPPARAMNPRGLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPRLESKEGIGMNMDDLDGLHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLQHGDSIMLYQDNQTQHYVIQAKKASDHQEIYSEVTTNISSNEQLQLVHSYGYEVNQSGLFSDDNEPATIFMDDAAGMSFVYDTITTFSNDSPLDFLGGSMSSYTTRTPATSTHLEGFGSVDNLSLDDFY 271
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 9767436 9768836 + Conep18aG0150400.1 Cone18ag1457 458418
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1457 271 Gene3D - 61 179 IPR015300 -
Cone18ag1457 271 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 175 IPR044800 GO:0003700(InterPro)
Cone18ag1457 271 SMART B3_2 65 167 IPR003340 GO:0003677(InterPro)
Cone18ag1457 271 CDD B3_DNA 63 165 IPR003340 GO:0003677(InterPro)
Cone18ag1457 271 Pfam B3 DNA binding domain 65 163 IPR003340 GO:0003677(InterPro)
Cone18ag1457 271 ProSiteProfiles B3 DNA-binding domain profile. 65 167 IPR003340 GO:0003677(InterPro)
Cone18ag1457 271 FunFam B3 domain-containing transcription factor FUS3 61 175 - -
Cone18ag1457 271 SUPERFAMILY DNA-binding pseudobarrel domain 63 161 IPR015300 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1457 Cone-Chr18:9767436 Cone1ag0130 Cone-Chr1:731629 1.21E-17 dispersed
Cone15ag0878 Cone-Chr15:6736370 Cone18ag1457 Cone-Chr18:9767436 1.81E-35 transposed
Cone11ag0023 Cone-Chr11:135379 Cone18ag1457 Cone-Chr18:9767436 3.62E-133 wgd
Cone16ag1028 Cone-Chr16:9914226 Cone18ag1457 Cone-Chr18:9767436 3.08E-72 wgd
Cone18ag1457 Cone-Chr18:9767436 Cone2ag0012 Cone-Chr2:100848 6.75E-70 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45253 PF02826 2-Hacid_dh_C 3.40E-27 CL0063 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1457 K09287 - mtr:11427060 281.952