Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone18ag1457 | ATGGCCCGCCAGAGAAGATCTTCCACCATCAATCTTCACCTTCTCTCCCTTTCACCACCTAATACTCATTCTTCTTCCTCCATTACTACTATTACTACTACCACTACTAATCCTGCTTCTCACGTGCCCATTAATACCTCTCCAATTCTGCCTCCTGCACGTGCAATGAATCCAAGAGGGTTGAGATTTCTGTTCCAAAAGGAGCTTAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGATTCTCCCAAAGAAAGCAGCAGAGGCTCATCTCCCTCGTCTGGAGAGTAAGGAGGGAATTGGTATGAACATGGACGACTTGGATGGTCTCCACGTTTGGAACTTCAAGTACAGGTTCTGGCCTAATAACAACAGCCGAATGTATGTGCTGGAAAACACAGGGGACTTTGTTAACGCTCACGGCTTGCAGCATGGAGATTCTATCATGCTGTATCAAGATAATCAAACTCAACATTATGTAATTCAGGCCAAAAAGGCTTCAGATCATCAAGAAATATATAGTGAGGTAACAACGAATATTAGTAGCAACGAGCAGCTGCAACTTGTTCACAGTTACGGTTATGAGGTTAACCAATCGGGTCTATTTTCGGACGATAACGAGCCGGCAACAATATTTATGGATGATGCAGCGGGCATGTCATTCGTCTATGATACCATCACCACCTTCTCCAATGACTCTCCGCTCGATTTTTTGGGTGGATCAATGAGCAGCTATACTACCAGAACCCCTGCAACATCTACTCATCTTGAAGGTTTTGGATCCGTCGACAATTTGTCTCTCGATGACTTTTATTAA | 816 | 43.87 | MARQRRSSTINLHLLSLSPPNTHSSSSITTITTTTTNPASHVPINTSPILPPARAMNPRGLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPRLESKEGIGMNMDDLDGLHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLQHGDSIMLYQDNQTQHYVIQAKKASDHQEIYSEVTTNISSNEQLQLVHSYGYEVNQSGLFSDDNEPATIFMDDAAGMSFVYDTITTFSNDSPLDFLGGSMSSYTTRTPATSTHLEGFGSVDNLSLDDFY | 271 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 9767436 | 9768836 | + | Conep18aG0150400.1 | Cone18ag1457 | 458418 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone18ag1457 | 271 | Gene3D | - | 61 | 179 | IPR015300 | - | |
| Cone18ag1457 | 271 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 39 | 175 | IPR044800 | GO:0003700(InterPro) | |
| Cone18ag1457 | 271 | SMART | B3_2 | 65 | 167 | IPR003340 | GO:0003677(InterPro) | |
| Cone18ag1457 | 271 | CDD | B3_DNA | 63 | 165 | IPR003340 | GO:0003677(InterPro) | |
| Cone18ag1457 | 271 | Pfam | B3 DNA binding domain | 65 | 163 | IPR003340 | GO:0003677(InterPro) | |
| Cone18ag1457 | 271 | ProSiteProfiles | B3 DNA-binding domain profile. | 65 | 167 | IPR003340 | GO:0003677(InterPro) | |
| Cone18ag1457 | 271 | FunFam | B3 domain-containing transcription factor FUS3 | 61 | 175 | - | - | |
| Cone18ag1457 | 271 | SUPERFAMILY | DNA-binding pseudobarrel domain | 63 | 161 | IPR015300 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone18ag1457 | Cone-Chr18:9767436 | Cone1ag0130 | Cone-Chr1:731629 | 1.21E-17 | dispersed | |
| Cone15ag0878 | Cone-Chr15:6736370 | Cone18ag1457 | Cone-Chr18:9767436 | 1.81E-35 | transposed | |
| Cone11ag0023 | Cone-Chr11:135379 | Cone18ag1457 | Cone-Chr18:9767436 | 3.62E-133 | wgd | |
| Cone16ag1028 | Cone-Chr16:9914226 | Cone18ag1457 | Cone-Chr18:9767436 | 3.08E-72 | wgd | |
| Cone18ag1457 | Cone-Chr18:9767436 | Cone2ag0012 | Cone-Chr2:100848 | 6.75E-70 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45253 | PF02826 | 2-Hacid_dh_C | 3.40E-27 | CL0063 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone18ag1457 | K09287 | - | mtr:11427060 | 281.952 |