Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag1463 ATGCTTCCCACAAGTGACGGCGTCGCTTGGATGGACCCACTCGACCACGAACAACACGACTCTGCCTGTTGGACCCAACCCCACGACGACCCCAACACCATCAAGAACCAGCAGCTCGACATCTCCATGTCCATGGCCGCTTCTCTCTCTTCTTTCAAATCCATGCTCGAAGCTGACTGGTTCCTCAACCCTTCACGTACCCATGACCTCCATTCCCTTCACTCTCACCACGACCAAGATATGAATTCCGCCGCCTTCTGCTCTAACCCGGCTCCTACTGACGACTTGCTCCTTCACCCAATCGACTCCTCCTCTTCATGCTCTCCTTCCCAGGCTTTCACTCTCGACCCTGCAGCTTCTTCCCACTCCCTCCCCTTCTTCCCCCACCACAAGTCCTGCTTCTCTTCCCTCCTCAACGTCCCTAACATTTTCGACAATGCCTTCGATTCGACCTGCGAAACAGCTGGCTTTCTCGGATCCTTTCACGGGAACAACCAAGCTGCTTCCAATTCTCATCTCCTCATAGCCGGTTTCGAGGGAATGCCTTCTCACCCGCAAATGCCTGCTCAGGAGCTCAGCTCAGCCTCCGATTTCCAGGCGACCACCCGACTGCTTCCTTTATCCGAAAACATGGGCCCTGCCCCGCTTGGTTCTGGGTTTAATCCGGTGGGATTCGAGGCCTTTGATGATCCTGAAAATGGTATATTGCAGAACAAGGCCAAGGGTTTAAGACCCCTAGAAGTTTTCCCTCCAATGGGAGCACAGCCCACTCTGTTTCAGAAGAGAGCAGCTCAAAGGCAGAGCTCAGGTGGTGGTGGAGGTGATAAATTGGACAACTTGGAGGTTCCGGGCTTGAGATTCGGAGGAGGGTCATCTTTAGGGATGATGATGGAGAGTTTGGAAAAGAAAAGGCGGAGGAATTGTGAGGAGGGTGAAATTGAGGATGCGAGCATTGATGTTTCTGGTTTGAATTATGATTCTGATGAGCTTAACGAGTACAGTAAGATGGAAGAGAATGCTGCTAAAATTGGTAATGGTGGAAGTAATTCTAATGCTAATAGTAATGTTACTGGTGGTGGAGGAGGAGGAGATCACAAGGGGAAGAAGAAGGGGCTTCCCGCCAAGAATCTTATGGCCGAAAGGCGCCGCAGAAAGAAGTTGAATGATCGCCTCTACATGCTCCGCTCCGTCGTTCCTAAGATCAGCAAGATGGATAGGGCGTCGATACTTGGAGATGCAGTAGACTACTTGAAGGAACTCCTGCAAAGGATCAATGATCTTCATAATGAGTTGGAGTCAACCCCAGGAAGCAGCTCTCTGTCCCTGCCTTCTACCAACTTTCACCCTTTGACTCCCACTCCTCCGACCCTTCCCTGCACCGTCAAGGAAGAGCTTTGCCCCAACCCTCTCTCCAGCCCTCAAAACCAGCCTGCCAGGGTGGAAGTAAGAGTAAGGGAAGGGAGGGCTGTGAACATCCACATGTTTTGTGGACGCAGACCAGGGCTGTTGCTGTCCACGATGAGGGCATTAGACAACCTTGGTTTGGATATCCAGCAAGCCGTCATTAGCTGTTTCAATGGCTTTGCCTTGGATGTCTTTCGAGCTGAGCAATGCAGGGAAGGTCAGGATGTGTTGCCGGAGCAGATAAAGGCTGCTCTTTTGGACTCTGCTGGCTTCCATGCTGCGGTGTAG 1692 51.83 MLPTSDGVAWMDPLDHEQHDSACWTQPHDDPNTIKNQQLDISMSMAASLSSFKSMLEADWFLNPSRTHDLHSLHSHHDQDMNSAAFCSNPAPTDDLLLHPIDSSSSCSPSQAFTLDPAASSHSLPFFPHHKSCFSSLLNVPNIFDNAFDSTCETAGFLGSFHGNNQAASNSHLLIAGFEGMPSHPQMPAQELSSASDFQATTRLLPLSENMGPAPLGSGFNPVGFEAFDDPENGILQNKAKGLRPLEVFPPMGAQPTLFQKRAAQRQSSGGGGGDKLDNLEVPGLRFGGGSSLGMMMESLEKKRRRNCEEGEIEDASIDVSGLNYDSDELNEYSKMEENAAKIGNGGSNSNANSNVTGGGGGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINDLHNELESTPGSSSLSLPSTNFHPLTPTPPTLPCTVKEELCPNPLSSPQNQPARVEVRVREGRAVNIHMFCGRRPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAALLDSAGFHAAV 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9795181 9798480 + Conep18aG0151000.1 Cone18ag1463 458424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag1463 563 CDD bHLH_AtAMS_like 374 434 - -
Cone18ag1463 563 MobiDBLite consensus disorder prediction 343 358 - -
Cone18ag1463 563 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 371 420 IPR011598 GO:0046983(InterPro)
Cone18ag1463 563 Pfam Plant bHLH transcription factor, ACT-like domain 480 553 IPR054502 -
Cone18ag1463 563 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 439 IPR036638 GO:0046983(InterPro)
Cone18ag1463 563 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 322 560 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone18ag1463 563 CDD ACT_UUR-ACR-like 492 556 - -
Cone18ag1463 563 SMART finulus 377 426 IPR011598 GO:0046983(InterPro)
Cone18ag1463 563 Pfam Helix-loop-helix DNA-binding domain 378 420 IPR011598 GO:0046983(InterPro)
Cone18ag1463 563 MobiDBLite consensus disorder prediction 341 374 - -
Cone18ag1463 563 Gene3D - 365 435 IPR036638 GO:0046983(InterPro)
Cone18ag1463 563 MobiDBLite consensus disorder prediction 260 282 - -
Cone18ag1463 563 FunFam BHLH transcription factor 367 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1042 Cone-Chr13:8621026 Cone18ag1463 Cone-Chr18:9795181 8.63E-17 dispersed
Cone17ag1159 Cone-Chr17:8553316 Cone18ag1463 Cone-Chr18:9795181 9.71E-37 dispersed
Cone18ag1463 Cone-Chr18:9795181 Cone4ag1276 Cone-Chr4:10485093 3.44E-36 dispersed
Cone11ag0017 Cone-Chr11:112158 Cone18ag1463 Cone-Chr18:9795181 0 wgd
Cone16ag1029 Cone-Chr16:9923448 Cone18ag1463 Cone-Chr18:9795181 1.46E-173 wgd
Cone18ag1463 Cone-Chr18:9795181 Cone2ag0011 Cone-Chr2:91010 1.69E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45254 PF13639 zf-RING_2 1.20E-11 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag1463 - - - 0.0