Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0017 ATGGACCCAGCAAAGGGACTCATTTGTGGGAGAACCCTAGGGTTGGTTTTCTTCTATCAAACAAATGATCTATACATTGTTGATGCTTACCGGGGGCTCCTCATGTTAACACTTAGTACCCGGCCGTTAGCTACTCCGCTTGCAAATGCTGCAGATGGTGTTCCTTTCCGCCTCTCTTATGCTGTGGATATTGATCAAAGAAATGGAATAATTTACTTTACTGATGCTAGTGCCACATATAATCTTAGCCAAATATCTGAGGCAGTAAATCGGCATGATGCAACGGGAAGACTTTTAAAGTACGATCCGAGTACTAAACAAGTTACAGTGCTAATCAGGGGGCTGTCTTTGGCAGTGGGTGTTGCTGTCAGTTTAGATGGGTCATACGTTCTCGTGTCTGAGTACATGGCCAGTAGGATTCGGAAATATTATCTCACATGTCTGCAAGCAAACACGTCTCAAATTATATCTCAGTTTTCAAATGTGGGGAATCCGGTTAACATTAAGTGCACTGCATTGGGAGATTTCTGGGTTGCAATGAACCTGAATGGAACAGTAGCTGCGGCCGTAAAAATTAGAGGAGATGGTTCAGAGGTGAGGAGAGTAATTTTGGATAAGCTTTACAGCACTGACATAACTGAGTTTCAAGAGCAACTGGGAAGTAGTTATGTTGGATTGTTGTGTTTTTCTAATTGCCTTGCTCTTTCAAGCCTACCCTTCAGAAAGCTTCAACTGCCATCAAACTCAACTGGACCTGTATCTATTGCCTTTGACATTTACGGTGGAGGACCTTATACTGGTATCTCCGACGGTAGAATTGTCAAGTACAGAGGACCAACAGATGGCTTTGCAGATTTTGCCTTCACTTCAACAAATAGAACAAAGGGGTTCTGTGATGGAACAACAGATCCAGCAAAGGGACCTGTTTGTGGGCGGCCATTAGGAATAGGCTTTTACTATCGAACAGGACAGCTTTACATTGCAGATGCTTATCGCGGCCTCATGGTGGTAGGAACCAACGGAAAGTTAGCTATCCAACTTGCCACTTCTGCAAATGGTGTTCCTTTCCGCTTGCCTCGTGATTTGGACATCGATCATACAACTGGAGTAGTTTACTTTACTGATTCTAGTGCTGTATACTCTCTGGGCGAAATAGCTGAAGCAAGACGGACGGGTGATGCAACAGGAAGACTATTGAAGTATGATCCAAATAGCAAACAAGTTACAGTGCTGCTGAGCGGACTAGCATTTGCGGTAGGTGCATCTCTCAGTTCAGATGCTTCCTTCCTTCTTTTTGGTGAGGCTAGAGACAGTAGGATTCTAAAGTATTGGCTCAAAGGACCAAAAGCTAACACCTCCGAGATCTTAATTCAGTTTCCAGATCGAGGGAGACCGGTTAACATTCAACGAACCATGCTGGGAGAGTTCTGGGTTGCAGTGAACATGATGAATGGAACAGTTCCTGCAGCGATAAAATTTAACAACAATGGTACTGAGCTTAGACGGATTATTCTGACTGAACAGTACAATACTACCAATATTAGTGAATTTGAAGACCGCTTGGGAAGAGTCTATATTGGATCTAGGTTTGCTGATTTTGTGGGTGTTATTGACTCGTTTCTGATATAG 1629 43.4 MDPAKGLICGRTLGLVFFYQTNDLYIVDAYRGLLMLTLSTRPLATPLANAADGVPFRLSYAVDIDQRNGIIYFTDASATYNLSQISEAVNRHDATGRLLKYDPSTKQVTVLIRGLSLAVGVAVSLDGSYVLVSEYMASRIRKYYLTCLQANTSQIISQFSNVGNPVNIKCTALGDFWVAMNLNGTVAAAVKIRGDGSEVRRVILDKLYSTDITEFQEQLGSSYVGLLCFSNCLALSSLPFRKLQLPSNSTGPVSIAFDIYGGGPYTGISDGRIVKYRGPTDGFADFAFTSTNRTKGFCDGTTDPAKGPVCGRPLGIGFYYRTGQLYIADAYRGLMVVGTNGKLAIQLATSANGVPFRLPRDLDIDHTTGVVYFTDSSAVYSLGEIAEARRTGDATGRLLKYDPNSKQVTVLLSGLAFAVGASLSSDASFLLFGEARDSRILKYWLKGPKANTSEILIQFPDRGRPVNIQRTMLGEFWVAVNMMNGTVPAAIKFNNNGTELRRIILTEQYNTTNISEFEDRLGRVYIGSRFADFVGVIDSFLI 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 145957 149586 - Conep19aG0002000.1 Cone19ag0017 458454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0017 542 SUPERFAMILY Calcium-dependent phosphotriesterase 241 538 - -
Cone19ag0017 542 SUPERFAMILY Calcium-dependent phosphotriesterase 9 218 - -
Cone19ag0017 542 PANTHER STRICTOSIDINE SYNTHASE-RELATED 239 538 - GO:0012505(PANTHER)|GO:0016787(PANTHER)
Cone19ag0017 542 Gene3D - 1 234 IPR011042 -
Cone19ag0017 542 Gene3D - 235 540 IPR011042 -
Cone19ag0017 542 Pfam Strictosidine synthase 61 145 IPR018119 GO:0009058(InterPro)|GO:0016844(InterPro)
Cone19ag0017 542 Pfam Strictosidine synthase 361 448 IPR018119 GO:0009058(InterPro)|GO:0016844(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0017 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0879 Cone-Chr13:7800470 Cone19ag0017 Cone-Chr19:145957 7.65E-81 dispersed
Cone19ag0014 Cone-Chr19:120984 Cone19ag0017 Cone-Chr19:145957 6.25E-130 dispersed
Cone19ag0015 Cone-Chr19:124604 Cone19ag0017 Cone-Chr19:145957 6.91E-118 dispersed
Cone19ag0017 Cone-Chr19:145957 Cone19ag0019 Cone-Chr19:157077 2.01E-131 dispersed
Cone19ag0017 Cone-Chr19:145957 Cone19ag0018 Cone-Chr19:154365 1.25E-75 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0017 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016139 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 3 9