Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0020 ATGCCTACCGTCAGCGTCGGAAGAGATCGGCTTTTTGCCGCCTTAGGAACGACTTATACTCAGGAAGAGTTCGAAGAGCTCTGTTTCAGCTTCGGCATCGAGCTTGACGACGTTACTACAGAAAAAGCGATTATTCGCAAAGAGAAGCATTTGGAAGAAGAAGCAGATGAAGATGAAGAAGTTATCTACAAGATTGAAATCCCTGCAAATAGATACGATCTTCTTTGCCTTGAAGGACTCTCGCAGGCTCTCCGTGTTTTCAATAGGCAGGAGGAGATACCCACCTACAGATTGGCTGACATTAGTAAGGAAGCTATGCATAAAATGCATGTAAAACCAGAGACGGCTGCTATTCGTCCCTATATCGTCTGTGCTGTTTTAAGGGGTATAACTTTTGATAATGCGAGTTATAACAGCTTCATTGATCTGCAAGACAAGCTTCATCAGAACATTTGTAGACGGAGAACCCTTGTTGCGATTGGCACTCATGACTTGGATACATTAGAAGGCCCTTTCACCTATGAGGCCTTGCCACCTACAAGTATTAATTTTGTGCCGTTAAAACAGACGAAGAACTTCAGAGCTGATGAGCTGATGGAGTTCTACAAATCCGATTTGAAATTGAAGAAATTTTTGCACATAATAGAAAGCTCACCAGTGTTCCCTGTTTTGTTTGATCGCAACAGAACTGTCCTGTCTTTACCGCCGATTATAAATGGGGCACACTCGGCTATCACTTTAAAGACAAAAAATGTGTTCATCGAATGTACAGCAACTGATCTGACAAAGGCAAAAGTTGTCTTGAACACAATGGTAACAGTCTTTTCAACCTACTGCAAAAGAAAATTTGAAATTGAACCAGTTAAAGTAATATATCCAGATGGGAAGTCAAGTCTTTATCCAGATTTATCTCTCCACGATATGGAAGTCCCTTTATCTTATATTACTGATTATATTGGAGTCTCTTTGGGGGCAGATGAGGTTACTACTCTGTTAAATAGGATGCAATTGCATGCTGAGAAATCAGCATCGGGTGATAAGTGTGGTATCACTGTAGCTGTACCTCCAACCAGAAGTGATGTCTTACATCCATGTGACGTCGTGGAGGATGTTGCTGTTGCTTATGGATTTAATAATATTCCTAAGAGAAGGCCGGCATCATCGAATCCCCTACCATTGAATCCCCTATCATTGAATAAGTTTAGTGATCTTATCAGATCGGAGATTGCGGAAAATGGGTTCACGGAGGTTTTGACATTCATACTCTGCTCGTATAAGGAGAATTTTGCCATGTTAAACCGTGTAGATGATAAATCAACTGCTGTGATCATTGGAAATCCACGTTCCACAGATTTTGAGGTCGTCCGAACCAGTCTTATGCCAGGAATTCTAAAAACTGTTGGTCATAACAAAGATCATCCAAAGCCTATTAAGATCTTTGAAGTGGGTGATGTTGTACTGTTGGATGAATCGACAGACGTTGGTGCAAGGAACCATCATCATCTTGCAGCACTATACTGTAGTGCTAATTCAGGATTTGAGCTTATTCATGGCCTGGTTGATAGAATTATGGTAGCTGTCGGGACGCCTTTTCTTCCAGGCGGTGATAATTTAGGATACCATCTAAAAAGTTCAGATGAGCCGGAGTTTCTTTGTGGTAGACAAGCTAAAATCATATACAGAGGAAAGCCTGTTGGTACTTTTGGCATTGTGCACCCTGAGGTTTTAGACAACTTTGACATTCCCGATCCGTGCTCCTATGTTGAACTTAGCCTTGAGAATTTATTATAG 1791 41.26 MPTVSVGRDRLFAALGTTYTQEEFEELCFSFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEIPANRYDLLCLEGLSQALRVFNRQEEIPTYRLADISKEAMHKMHVKPETAAIRPYIVCAVLRGITFDNASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLEGPFTYEALPPTSINFVPLKQTKNFRADELMEFYKSDLKLKKFLHIIESSPVFPVLFDRNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKVVLNTMVTVFSTYCKRKFEIEPVKVIYPDGKSSLYPDLSLHDMEVPLSYITDYIGVSLGADEVTTLLNRMQLHAEKSASGDKCGITVAVPPTRSDVLHPCDVVEDVAVAYGFNNIPKRRPASSNPLPLNPLSLNKFSDLIRSEIAENGFTEVLTFILCSYKENFAMLNRVDDKSTAVIIGNPRSTDFEVVRTSLMPGILKTVGHNKDHPKPIKIFEVGDVVLLDESTDVGARNHHHLAALYCSANSGFELIHGLVDRIMVAVGTPFLPGGDNLGYHLKSSDEPEFLCGRQAKIIYRGKPVGTFGIVHPEVLDNFDIPDPCSYVELSLENLL 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 165548 176423 - Conep19aG0002300.1 Cone19ag0020 458457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0020 596 ProSiteProfiles B5 domain profile. 303 382 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cone19ag0020 596 SMART B5_2 305 377 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cone19ag0020 596 FunFam phenylalanine--tRNA ligase beta subunit 100 304 - -
Cone19ag0020 596 Pfam tRNA synthetase B5 domain 308 377 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cone19ag0020 596 Gene3D - 100 304 IPR020825 -
Cone19ag0020 596 NCBIfam phenylalanine--tRNA ligase subunit beta 1 596 IPR004531 GO:0000166(InterPro)|GO:0004826(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006432(InterPro)
Cone19ag0020 596 Pfam B3/4 domain 135 261 IPR005146 GO:0003723(InterPro)|GO:0004826(InterPro)
Cone19ag0020 596 CDD PheRS_beta_core 397 595 IPR041616 -
Cone19ag0020 596 FunFam Phenylalanine--tRNA ligase beta subunit 1 89 - -
Cone19ag0020 596 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 595 IPR045060 GO:0004826(InterPro)|GO:0004826(PANTHER)|GO:0006432(PANTHER)|GO:0006432(InterPro)|GO:0009328(PANTHER)
Cone19ag0020 596 Gene3D - 306 380 - -
Cone19ag0020 596 Gene3D Bira Bifunctional Protein; Domain 2 396 596 IPR045864 -
Cone19ag0020 596 SMART B3_4_2 118 280 IPR005146 GO:0003723(InterPro)|GO:0004826(InterPro)
Cone19ag0020 596 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 88 IPR040659 -
Cone19ag0020 596 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 397 592 IPR041616 -
Cone19ag0020 596 Gene3D - 1 89 - -
Cone19ag0020 596 FunFam Phenylalanyl-tRNA synthetase, beta subunit 306 380 - -
Cone19ag0020 596 FunFam phenylalanine--tRNA ligase beta subunit 396 596 - -
Cone19ag0020 596 SUPERFAMILY Putative DNA-binding domain 5 94 IPR009061 -
Cone19ag0020 596 SUPERFAMILY Putative DNA-binding domain 308 381 IPR009061 -
Cone19ag0020 596 SUPERFAMILY Class II aaRS and biotin synthetases 375 595 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0020 K01890 - - csv:101210257 970.689
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39