Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0022 ATGGCTCAAGATACAACTCCAGCTGCTGAATCACCTCGAAGAAGTTCTGGTCTTTTGCGAGATCAGGTCCAATTGGTTAAGAAAAAGGACTCTGATCATTATGAGATTGTCCCCATTCCAGATTCCCTATCATTCGAGAAAGGTTTCTTCATAGTAATTCGTGCCTGCCAATTTCTGGCTCAAAAGAATGATGGGATAACAGTAGTAGGAGTAGCAGGCCCATCTGGAGCCGGGAAAACCGTATTCACCGAGAAGGTGCGTAACTTTATGCCAAGCATAGCCGTCATCTCGATGGACAACTACAATGATTCTAGTCGCATCATAGACGGCAACTTTGATGACCCACGCCTAACGGATTACGACACATTGCTGGAAAATATACATGGTCTTAAAGCTGGGAAACCTGTTCAGGTTCCTATATATGATTTTAAGTCGAGTTCTCGCATAGGTTATAGGACAGTTGAAGTGCCTAGTTCCCGTATTGTGATTATTGAGGGCATCTATGCTTTGAGCGAAAAACTGCGGCCTTTGCTTGATCTTCGTGTATCTATCACCGGTGGGGTCCATTTTGATCTGGTCAAGCGGGTTTTACGCGACATTCAGCGTGCTGGGCAAGAGCCTGAAGAAATCATCCATCAAATATCTGAGACGGTGTATCCCATGTATAAAGCTTTCATTGAACCAGATCTCAAAACAGCACATATTAAGATCACCAACAAGTTCAATCCATTCACTGGATTCCAGAATCCGACCTACATTTTGAAGTCAACAAAGGTGATAACAATTGATGCAATAAAGGCTGTTATTTCCGAAGATCATAAGGAAAGAACAGAGGAGACTTATGACATTTATCTTCTACCTCCCGGTGAAGATCCCGAAGTGTGTCAATCATATCTGAGGATGAGGAACAGGGACGGGAAGTACAATCTCATGTTTGAGGAGTGGGTTACGGATATTCCATTCATAATATCACCGAGAATAAGTTTTGAAGTTAGTGTGCGGCTTCTTGGTGGGCTTATGGCTTTGGGGTATACAATTGCTACCATTCTCAAGAGAAGCAGCCATATATTTTCTGATGATAAAGTGGTTGTCAAGACCGATTGGCTCGAGCAACTTAACCGCCAATATGTTCAGGTTCAAGGAAAAGATCGTTCCTATGTCAAATATGTGGCAGAACAGCTCGGCCTGGATGGTTCCTATCTTCCTCGAACTTACATCGAACAAATACAGCTAGAGAAATTGGTCAATGATGTTATGGCACTGCCAGATGATTTGAAGACAAAGCTGAGCATAGATGAGGATTTGGTCTCAAGCCCCAAAGAAGCCCTTTCCCGAGCATCTGCAGATAGGAGGACTAAGTATCTCAATCGTGGTACAACACACTCTTACTCGAGTCAGAGGGAAAAGACCCTGTCCAAGCTTACTAAACTTGCAGTTAATAACAGAAGGTTCGATGTTAGAATGCCGGAGTCACCTGCCACACTTTCCAACCAGGGAGTTATTACCCATCTTTCAGAACAAATCTCTACACTGAATGAGAGGATGGATGAGTTTACTACTCGTATTGAAGAGCTCAACTCCAAGTTTGCTGTTTGGAAAGTTTCAGCAGCAGGCCAACAGAACTTGTCTGTGCAGGCCGAAACCTGCAATGGCTCGGGACCCACTTCTCTATTCGTGTCTGGCTTGAATAACGGTTCCTTGACAGGATCATTGCTGCCTCATTCTTCATCTTCACCTCAACTGGCTAAGGATTCTCCATTGATAGAAGAGATTTTGAATATTGCAAGAGGGCAACGCCAAGTATTGCACCAGATAGACAATCTGAGCAATTTGCTAAGGGACTACTCGGGAGAAAGGTTTCACCGGGGTCGGAGCAATGAGGTGAGCAACAGGATGACTGACCTCAACTCTATGGCCAGTCCGCTTATTCTAACTCTAGCAATTGGTTGTTTAGGACTCCTTGTGTTCAAGAACCTTACATCCCAAAAGTAA 1992 43.93 MAQDTTPAAESPRRSSGLLRDQVQLVKKKDSDHYEIVPIPDSLSFEKGFFIVIRACQFLAQKNDGITVVGVAGPSGAGKTVFTEKVRNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLENIHGLKAGKPVQVPIYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSITGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKITNKFNPFTGFQNPTYILKSTKVITIDAIKAVISEDHKERTEETYDIYLLPPGEDPEVCQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRISFEVSVRLLGGLMALGYTIATILKRSSHIFSDDKVVVKTDWLEQLNRQYVQVQGKDRSYVKYVAEQLGLDGSYLPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDEDLVSSPKEALSRASADRRTKYLNRGTTHSYSSQREKTLSKLTKLAVNNRRFDVRMPESPATLSNQGVITHLSEQISTLNERMDEFTTRIEELNSKFAVWKVSAAGQQNLSVQAETCNGSGPTSLFVSGLNNGSLTGSLLPHSSSSPQLAKDSPLIEEILNIARGQRQVLHQIDNLSNLLRDYSGERFHRGRSNEVSNRMTDLNSMASPLILTLAIGCLGLLVFKNLTSQK 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 183285 186850 - Conep19aG0002500.1 Cone19ag0022 458459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0022 663 Gene3D - 67 249 IPR027417 -
Cone19ag0022 663 Pfam Phosphoribulokinase / Uridine kinase family 68 237 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Cone19ag0022 663 SUPERFAMILY CYTH-like phosphatases 261 408 IPR033469 -
Cone19ag0022 663 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Cone19ag0022 663 PANTHER URIDINE KINASE 54 530 - GO:0005737(PANTHER)
Cone19ag0022 663 CDD UMPK_like 68 240 - -
Cone19ag0022 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 239 IPR027417 -
Cone19ag0022 663 Coils Coil 501 528 - -
Cone19ag0022 663 Pfam CYTH domain 270 405 IPR023577 -
Cone19ag0022 663 PRINTS Uridine kinase signature 66 83 - -
Cone19ag0022 663 PRINTS Uridine kinase signature 133 148 - -
Cone19ag0022 663 PRINTS Uridine kinase signature 189 199 - -
Cone19ag0022 663 PRINTS Uridine kinase signature 225 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0022 K00876 - - vvi:100243884 1068.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0881 Cone-Chr13:7814408 Cone19ag0022 Cone-Chr19:183285 0 dispersed
Cone19ag0022 Cone-Chr19:183285 Cone19ag0766 Cone-Chr19:6221028 1.18E-54 dispersed
Cone19ag0022 Cone-Chr19:183285 Cone19ag0879 Cone-Chr19:6890108 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g403 Blo04g00806 . . . . . . . . . Cma10g00269 Cma11g00239 Car10g00252 Car11g00218 . . Cpe04g01432 Bhi02g00041 Tan09g1983 . . . . . . . . . . . . . . . Cone19ag0022 . . . . . . . Bda14g00899 . Bpe15g00559 Bma03g00874 . . Cmo10g00287 Cmo11g00243 . . . . . Cpe18g00728 . . . . . . . . . . . . . . Lsi06g01374 Csa01g00316 . Cme02g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71