Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0032 ATGATGATAGAAATGCAAGACTTTCAATACTCTATTGGCGGCGGCGGAGATCGGATGATCAGACCGCAACACTACCAGATTAATCACCAGAACCTCCAGGCTTTGAAGTGCCCAAGGTGTGACTCCGTCAATACAAAGTTCTGTTACTATAACAACTACAATCTCTCCCAGCCTCGTCACTTCTGCAAGGGCTGCCGGCGGTACTGGACCCGAGGGGGTGTCCTCCGCAACGTTCCGGTCGGCGGTGGTTGCCGGAAAGCAAAGCGATCTAAGCCGAAACCTCAGTCAAAAACTTCGGTGGCAGTACGGACGGTTCGTGAGCGTAAAGCGAACTCTCATTCTAGCAGCGAGAGCTCTAGTCTCACCGCCACTACTCCAGCCGTCGCCACCGCAGCCGCTGCTGCTGAGGCAGTGTCTGTTTTGTCGTTTAGGTCTGCACCGGATTTGATCACCGGAGAAAATCCTAGTCTCGATGTTGTTGGATTAATGGAGCAGCAACCGCCAAATTGCGGGATCTTTCCGGAAAGCGGAAGCTTCGCGAACTTGTTGTCGTCAGTGAACGATACGTCGCCGTTTGGATTTAACGATAATAGTAGTAATATATCCAATTTGACGCCGTCGTTTGGTTATCAGTTTCAAGGTCAGGATAATAATCGGTGGCAGCCGCAGAAGATGGTGGCAGTGGGGATGGTTGAGGAACTGAGGAAGCAAGATATCACAGCCGTGGGAATGATTGATCAGATTGATCTATCGACGTTGCATAATAGTAGATCGAGCAACGTGGGATTCGGATCGTTGGATTGGAATGTAAACGGAGATCAAGTTTTGTGTGATCTTCCCAACACCGCCGATCAAGCTTACTGGGTCCAGAGCCAATGGACCACAACCGATCATCAGGATCACCCTAATCTCTTCCTTCCTTAA 924 50.11 MMIEMQDFQYSIGGGGDRMIRPQHYQINHQNLQALKCPRCDSVNTKFCYYNNYNLSQPRHFCKGCRRYWTRGGVLRNVPVGGGCRKAKRSKPKPQSKTSVAVRTVRERKANSHSSSESSSLTATTPAVATAAAAAEAVSVLSFRSAPDLITGENPSLDVVGLMEQQPPNCGIFPESGSFANLLSSVNDTSPFGFNDNSSNISNLTPSFGYQFQGQDNNRWQPQKMVAVGMVEELRKQDITAVGMIDQIDLSTLHNSRSSNVGFGSLDWNVNGDQVLCDLPNTADQAYWVQSQWTTTDHQDHPNLFLP 307
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
19 230583 234696 + Conep19aG0003500.1 Cone19ag0032 458469
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0032 307 MobiDBLite consensus disorder prediction 83 123 - -
Cone19ag0032 307 Pfam Dof domain, zinc finger 34 89 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone19ag0032 307 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone19ag0032 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 194 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone19ag0032 307 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0032 Cone-Chr19:230583 Cone9ag1003 Cone-Chr9:5214089 1.76E-32 dispersed
Cone13ag0023 Cone-Chr13:148128 Cone19ag0032 Cone-Chr19:230583 7.33E-158 wgd
Cone16ag0243 Cone-Chr16:2657865 Cone19ag0032 Cone-Chr19:230583 4.19E-56 wgd
Cone19ag0032 Cone-Chr19:230583 Cone2ag0789 Cone-Chr2:33879215 3.92E-66 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45257 PF14432 DYW_deaminase 1.10E-32 CL0109 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0032 - - - 0.0