Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag0032 | ATGATGATAGAAATGCAAGACTTTCAATACTCTATTGGCGGCGGCGGAGATCGGATGATCAGACCGCAACACTACCAGATTAATCACCAGAACCTCCAGGCTTTGAAGTGCCCAAGGTGTGACTCCGTCAATACAAAGTTCTGTTACTATAACAACTACAATCTCTCCCAGCCTCGTCACTTCTGCAAGGGCTGCCGGCGGTACTGGACCCGAGGGGGTGTCCTCCGCAACGTTCCGGTCGGCGGTGGTTGCCGGAAAGCAAAGCGATCTAAGCCGAAACCTCAGTCAAAAACTTCGGTGGCAGTACGGACGGTTCGTGAGCGTAAAGCGAACTCTCATTCTAGCAGCGAGAGCTCTAGTCTCACCGCCACTACTCCAGCCGTCGCCACCGCAGCCGCTGCTGCTGAGGCAGTGTCTGTTTTGTCGTTTAGGTCTGCACCGGATTTGATCACCGGAGAAAATCCTAGTCTCGATGTTGTTGGATTAATGGAGCAGCAACCGCCAAATTGCGGGATCTTTCCGGAAAGCGGAAGCTTCGCGAACTTGTTGTCGTCAGTGAACGATACGTCGCCGTTTGGATTTAACGATAATAGTAGTAATATATCCAATTTGACGCCGTCGTTTGGTTATCAGTTTCAAGGTCAGGATAATAATCGGTGGCAGCCGCAGAAGATGGTGGCAGTGGGGATGGTTGAGGAACTGAGGAAGCAAGATATCACAGCCGTGGGAATGATTGATCAGATTGATCTATCGACGTTGCATAATAGTAGATCGAGCAACGTGGGATTCGGATCGTTGGATTGGAATGTAAACGGAGATCAAGTTTTGTGTGATCTTCCCAACACCGCCGATCAAGCTTACTGGGTCCAGAGCCAATGGACCACAACCGATCATCAGGATCACCCTAATCTCTTCCTTCCTTAA | 924 | 50.11 | MMIEMQDFQYSIGGGGDRMIRPQHYQINHQNLQALKCPRCDSVNTKFCYYNNYNLSQPRHFCKGCRRYWTRGGVLRNVPVGGGCRKAKRSKPKPQSKTSVAVRTVRERKANSHSSSESSSLTATTPAVATAAAAAEAVSVLSFRSAPDLITGENPSLDVVGLMEQQPPNCGIFPESGSFANLLSSVNDTSPFGFNDNSSNISNLTPSFGYQFQGQDNNRWQPQKMVAVGMVEELRKQDITAVGMIDQIDLSTLHNSRSSNVGFGSLDWNVNGDQVLCDLPNTADQAYWVQSQWTTTDHQDHPNLFLP | 307 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 230583 | 234696 | + | Conep19aG0003500.1 | Cone19ag0032 | 458469 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag0032 | 307 | MobiDBLite | consensus disorder prediction | 83 | 123 | - | - | |
| Cone19ag0032 | 307 | Pfam | Dof domain, zinc finger | 34 | 89 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cone19ag0032 | 307 | ProSitePatterns | Zinc finger Dof-type signature. | 37 | 73 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cone19ag0032 | 307 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 28 | 194 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone19ag0032 | 307 | ProSiteProfiles | Zinc finger Dof-type profile. | 35 | 89 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone19ag0032 | Cone-Chr19:230583 | Cone9ag1003 | Cone-Chr9:5214089 | 1.76E-32 | dispersed | |
| Cone13ag0023 | Cone-Chr13:148128 | Cone19ag0032 | Cone-Chr19:230583 | 7.33E-158 | wgd | |
| Cone16ag0243 | Cone-Chr16:2657865 | Cone19ag0032 | Cone-Chr19:230583 | 4.19E-56 | wgd | |
| Cone19ag0032 | Cone-Chr19:230583 | Cone2ag0789 | Cone-Chr2:33879215 | 3.92E-66 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45257 | PF14432 | DYW_deaminase | 1.10E-32 | CL0109 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag0032 | - | - | - | 0.0 |