Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0034 ATGCGGCGGCGGGCGGCCGACAATCGGCGCCCGGTCAGAAGAAGGATATCGGATTGGATTTTAGTGCTTCTTGGGCTCTTCTTTGTTGCTGGATTCGTTTTGTTTGTACTTCACCATAATCACCAAGAAGATCTGATCGAACAGCCCACTGTGGAGAGAAATTGGAGGATCGAAGGGCCTGCTAATCACAGGTTAAATTTCACTGAAGAAATATCAAGCGTTGCATCATATATCAGGCAATTGGCCGAGCAAATGGCACTGGCGAAGGCATATGTCATTATCGCCAAAGAGCACAATAATCTTCACCTTGCTTGGCAACTTAGTTCAAAGATCAGAAGTGGTCAACTTTTGCTTTCAAAAGCCGTCAATAGAGGTGACTCTGTTACTATTGAAGAAGCTGAGCCCATAATCCGAAGCCCATCTTCTCTTATATTCAAAGCACAAGACGCACATTATGATATTGGGACCACAATGTTGACCATGAAAAATCATATTCAAGCCCTTGAAGAACGGACTAATGCTGCAGCAGTACAAAGCACAGTTTTTGGTCAACTTACAACCGGATCACTACCCAAAAGCCTCCATTGTCTGAATGTTAAACTCATGTCTGATTGGCTTACAAACCCAGCCTTACAAGAAAGAGAAAGGGAGAGGAGAAACTCCCCTTGTCTTAATGATAACAATCTCGACCATTTCTGCTTATTTTCCGATAAAGTGGTATCAACCTCTGTAGTTGTCAACTCCACTGTTTCTAATGCAGATCATCCGAAGCAACTAGTGTTTCATATCATCACTAATGGATTCTATTACGAGGCCATGCAGGCATGGTTTCTAGACAGCCTCAATTCAAAGTTGCAAGAATCCTTTTTCGGAGGATACCAAGATTTGAACCCGAGATACCCTTCTTTGTTGAACCATCTTCAATTTTACATCCCAGAAATATATCCACAACTAGAGAAGGTGGTTTTTCTAGATGATGATGTCATTGTCCAAAAGGACATGACCACTCTGTTTTCGCTCAATTTGCATGGGAATGTAAATGGAGCTGTTGAAACTTGTCTTGAATCGTTTCATCGTTATTACAAGTATCTAAATTTTTCAAACCCGATTATTAGTTCGAAGTTTGATCCACAGGCATGTGGATGGGCTTTTGGAATGAATGTTTTTGATCTAATTGCATGGCGGAAAGCTAATGTGACTGCTAGATTTCATTACTGGCAAGAACAGAATAAGGATGGAATGTTATGGAAGTTAGGTACTCTTCCTTCTGGTCTTTTGACCTTCTATGGTCTTACAGAACCACTTGATAGGAGATGGCATGTTTTGGGATTGGGTTATGATCCGAACGTTGACAGCCGTTTGATCAAAAGTGCGGTAGTTGTTCACTTTAATGGGAATATAAAGCCATGGTTGAGGTCGGCAATTGGAAGGTACAAGCCTTTATGGGAGAAGTATATAAATCAGAGCCATCTTTATCTGAAAGATTGCATGACAAGCTAG 1500 41.4 MRRRAADNRRPVRRRISDWILVLLGLFFVAGFVLFVLHHNHQEDLIEQPTVERNWRIEGPANHRLNFTEEISSVASYIRQLAEQMALAKAYVIIAKEHNNLHLAWQLSSKIRSGQLLLSKAVNRGDSVTIEEAEPIIRSPSSLIFKAQDAHYDIGTTMLTMKNHIQALEERTNAAAVQSTVFGQLTTGSLPKSLHCLNVKLMSDWLTNPALQERERERRNSPCLNDNNLDHFCLFSDKVVSTSVVVNSTVSNADHPKQLVFHIITNGFYYEAMQAWFLDSLNSKLQESFFGGYQDLNPRYPSLLNHLQFYIPEIYPQLEKVVFLDDDVIVQKDMTTLFSLNLHGNVNGAVETCLESFHRYYKYLNFSNPIISSKFDPQACGWAFGMNVFDLIAWRKANVTARFHYWQEQNKDGMLWKLGTLPSGLLTFYGLTEPLDRRWHVLGLGYDPNVDSRLIKSAVVVHFNGNIKPWLRSAIGRYKPLWEKYINQSHLYLKDCMTS 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 238320 241222 - Conep19aG0003700.1 Cone19ag0034 458471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0034 499 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 232 497 IPR029044 -
Cone19ag0034 499 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 293 497 IPR029993 GO:0047262(InterPro)
Cone19ag0034 499 FunFam Hexosyltransferase 232 492 - -
Cone19ag0034 499 Pfam Glycosyl transferase family 8 239 472 IPR002495 GO:0016757(InterPro)
Cone19ag0034 499 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 497 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0034 K13648 - - csv:101213179 748.814
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0034 Cone-Chr19:238320 Cone3ag1385 Cone-Chr3:32809055 9.64E-170 dispersed
Cone13ag0025 Cone-Chr13:162819 Cone19ag0034 Cone-Chr19:238320 0 wgd
Cone19ag0034 Cone-Chr19:238320 Cone2ag0791 Cone-Chr2:33889733 7.86E-252 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g434 Blo04g00801 . . Bda15g00632 Bpe12g00516 . . . . . Cma10g00285 Cma11g00225 Car10g00267 Car11g00201 Sed08g0293 . Cpe04g01446 Bhi02g00071 Tan09g2011 Cmetu02g0626 . Hepe09g0290 . . Cla06g01525 Cam06g1682 Cec06g1744 Cco06g1742 Clacu06g1649 Cmu06g1596 Cre06g2407 Cone2ag0791 . Cone13ag0025 Cone19ag0034 . . . . . . . Bda14g00893 . Bpe15g00565 . . . Cmo10g00302 Cmo11g00228 . . . . . Cpe18g00717 . . . . . . . . . . . . . . Lsi06g01394 Csa01g00336 Chy02g02406 Cme02g01808
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005747 2 1 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39