Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0035 ATGGAGTCTTGGAGCTATGTTTCCGAACGAAAGAGATTCCGGTCTGACGAGATCAATTCACCTGCAAATTCACTAGCAAGAAATAAGCTTTCCCTTTCAAACTGGGAATCCCAAAATTCATATTGTTTTGGCCATAGCAAGAGCGATATTGATAATCAAGGTCAACAACATATTGATAAAGATCTGACTAGTAGTAGTAAGGTTATGCCTGCATTTCCTGGCCACGACTTGATCTCTTCAAAGATGTCAGGTTCTATAGTGGACTCTAGTAGTTGGGATTCATCTCTTATCTGTTTGAATCTTGGGAGATTTTCCGGTCATAAGAATGCTCCTCCTCCTCCGATTTGGTCATCTTTGGATTCTTCTTCCAAGCCACCTTCAAAGAGGGTAAAAAGCTCTGGTTTGAATTCTCAAGCTTATTTCTGCCAAGTTTATGGGTGTAATAAAGATCTCTGCTCTTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGATGCACTCCAAAACGGCTAGAGTTATTGTCAATGGATTCGAACAAAGGTTCTGCCAGCAATGTAGCAGGTTTCACTTGCTAGCCGAATTTGATGATGGTAAGCGCAGCTGCCGGAAACGGCTTGCAGGCCATAACGAACGTAGGAGAAAGCCTCTAGTCGGTACAACCTCTGGAAAATCGCTTCATCCATATGATAATATCAGTTTTCCATCAACAAAAGTATTGGCTTCAACCTCGTTTATTTGCCAAGAGATCCTACCTAGTCCTCCTCTTCTTCTACATACAAACAAGTTCCAAACAAATGACTGGTCCGGCCAAATAAAAGTCGAACAAGACAGCAACAAGAGTAGTTTAAGGCCTCCTCTACATTGCAACATTGGAACACATGTTCCAGGTTATTCGGACAAGGTTGCAAATACTGGTCAATACACTTTTAACCCTAACGCAAGTGCAGATTATATGTTCAATGAAGCCTCAATAGGGAGTGAAGGATTGAGCTTTTTCGATACATCATGTGTACCAGTCTCTGGATGTGCTCTCTCTCTTCTGTCATCTCATCATCAATCACAAAACTCCTCAACCCATTCCTCCAAAATTGCTATGCCTCTTCCTAAGTTAGTCATGCCTGATAGCAGTCAAAGTCAAACTAATTACAGCATGAGTCTACTTGCTTCATCTGAAAGTAGTGATGTGATCAACTTTAAAATCAAGGACCAGATTTCACATGGAACTTGTCCAACCATTGACTTGCTGCAACTTTCATCGCAGCTTGAACGAGTGGAGCATCAGAAGCGGTCGAGCACCATGTGGTGGGTCCCACATTCCTCTTGA 1326 42.01 MESWSYVSERKRFRSDEINSPANSLARNKLSLSNWESQNSYCFGHSKSDIDNQGQQHIDKDLTSSSKVMPAFPGHDLISSKMSGSIVDSSSWDSSLICLNLGRFSGHKNAPPPPIWSSLDSSSKPPSKRVKSSGLNSQAYFCQVYGCNKDLCSSKDYHKRHKVCEMHSKTARVIVNGFEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPLVGTTSGKSLHPYDNISFPSTKVLASTSFICQEILPSPPLLLHTNKFQTNDWSGQIKVEQDSNKSSLRPPLHCNIGTHVPGYSDKVANTGQYTFNPNASADYMFNEASIGSEGLSFFDTSCVPVSGCALSLLSSHHQSQNSSTHSSKIAMPLPKLVMPDSSQSQTNYSMSLLASSESSDVINFKIKDQISHGTCPTIDLLQLSSQLERVEHQKRSSTMWWVPHSS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 246608 249074 + Conep19aG0003800.1 Cone19ag0035 458472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0035 441 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 73 380 IPR044817 GO:0003677(InterPro)
Cone19ag0035 441 ProSiteProfiles Zinc finger SBP-type profile. 139 216 IPR004333 GO:0003677(InterPro)
Cone19ag0035 441 FunFam Squamosa promoter-binding-like protein 14 133 203 - -
Cone19ag0035 441 Pfam SBP domain 142 215 IPR004333 GO:0003677(InterPro)
Cone19ag0035 441 SUPERFAMILY SBT domain 140 219 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone19ag0035 441 Gene3D - 132 203 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0035 Cone-Chr19:246608 Cone2ag0990 Cone-Chr2:35293785 1.45E-35 dispersed
Cone13ag0026 Cone-Chr13:172955 Cone19ag0035 Cone-Chr19:246608 7.16E-261 wgd
Cone16ag0222 Cone-Chr16:1572811 Cone19ag0035 Cone-Chr19:246608 9.86E-83 wgd
Cone19ag0035 Cone-Chr19:246608 Cone2ag0792 Cone-Chr2:33927478 1.05E-84 wgd
Cone19ag0035 Cone-Chr19:246608 Cone6ag0516 Cone-Chr6:2580897 8.79E-45 wgd
Cone19ag0035 Cone-Chr19:246608 Cone9ag0529 Cone-Chr9:2537830 6.49E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45258 PF00010 HLH 8.20E-15 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0035 - - - 0.0