Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0046 ATGGAAGCTTTAATGCGAATAGCCCCATCACCTACTCGTTGTAGGAAAGGAGATTTTTCTTTTCGTCCTAATAAGCTGTCTCCACAATTTAGAAAGAGTTTATACATAAATAGAGCTCCAATGATGAAAAATCATCCCCTGTCGCTTAATCCAATCTCTGCTTCTGTTCAACCAATAGAAGAAGAAGCAGCTCCGGCAATTGGCCAATTCGACAACACTCTACCATCCAAAGAGGTACTTGAGGTGTGGAAAAGTGCAAATGCAGTGTGCTTTGATGTTGATAGCACAGTTTGCCTAGATGAAGGAATTGACGAACTAGCGGATTATTGTGGAGCAGGAAAGGCTGTTGCAGAATGGACTGCTAGGGCAATGGGTGGTTCGGTACCTTTTGAGGAGGCCTTAGCTGCTAGACTATCTTTGTTCAATCCTTCCCTTTCTCAAGTCAATGATTTCCTTGCTAAAAGGCCACCGAGGCTCTCTCCCGGCATAGATGAGTTGGTGAAGAAGCTGAAAGCTAATAATATTGAGGTTTATCTAATTTCCGGAGGTTTTCGTCAAATGATCAATCCTGTTGCATCAATCCTTGAGATTCCTCATGAACATATTTTTGCGAATAATCTTCTGTTTGGAAGCTCGGGAGAATTTTTGGGATTTGATAAAAATGAACCCACTTCTAGGAGTGGAGGCAAAGCTGCTGCTGTGCAACAACTCAGAAAGGCACATGGCTACAACACTTTGGTCATGATTGGGGATGGTGCGACTGATCTTGAGGCCCGTAAACCGGGAGGTGCCGACTTGTTTATATGTTACGCGGGAGTTCAGTTCAGAGAGGCTGTTGCGGCGAAATCTGATTGGGTGGTATTTAATTTTCGAGATCTAATCAATTCCCTCGGATAG 897 43.59 MEALMRIAPSPTRCRKGDFSFRPNKLSPQFRKSLYINRAPMMKNHPLSLNPISASVQPIEEEAAPAIGQFDNTLPSKEVLEVWKSANAVCFDVDSTVCLDEGIDELADYCGAGKAVAEWTARAMGGSVPFEEALAARLSLFNPSLSQVNDFLAKRPPRLSPGIDELVKKLKANNIEVYLISGGFRQMINPVASILEIPHEHIFANNLLFGSSGEFLGFDKNEPTSRSGGKAAAVQQLRKAHGYNTLVMIGDGATDLEARKPGGADLFICYAGVQFREAVAAKSDWVVFNFRDLINSLG 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 295358 297537 - Conep19aG0005000.1 Cone19ag0046 458483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0046 298 FunFam Phosphoserine phosphatase, chloroplastic 145 297 - -
Cone19ag0046 298 Gene3D - 150 297 IPR023214 -
Cone19ag0046 298 NCBIfam HAD-IB family phosphatase 88 260 - -
Cone19ag0046 298 SUPERFAMILY HAD-like 78 297 IPR036412 -
Cone19ag0046 298 Pfam haloacid dehalogenase-like hydrolase 87 260 - -
Cone19ag0046 298 PANTHER PHOSPHOSERINE PHOSPHATASE 45 297 IPR050582 GO:0000287(PANTHER)|GO:0004647(PANTHER)|GO:0005737(PANTHER)|GO:0006564(PANTHER)|GO:0009507(PANTHER)|GO:0016311(PANTHER)
Cone19ag0046 298 FunFam Phosphoserine phosphatase SerB 98 149 - -
Cone19ag0046 298 NCBIfam phosphoserine phosphatase SerB 79 281 IPR004469 GO:0006564(InterPro)|GO:0036424(InterPro)
Cone19ag0046 298 CDD HAD_PSP_eu 88 290 - -
Cone19ag0046 298 FunFam Phosphoserine phosphatase, chloroplastic 74 128 - -
Cone19ag0046 298 Gene3D Phosphoserine phosphatase; domain 2 99 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0046 K01079 - - csv:101208305 438.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0037 Cone-Chr13:225809 Cone19ag0046 Cone-Chr19:295358 7.72E-188 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g655 . . Bda06g00523 . . . . Bma12g00966 . . . . . Car11g00184 . . Cpe04g01462 Bhi02g00097 . . . Hepe09g0271 . . Cla06g01541 Cam06g1700 Cec06g1762 Cco06g1761 Clacu06g1667 Cmu06g1613 Cre06g2426 . . Cone13ag0037 Cone19ag0046 . . . . . Blo15g00335 . . Bpe07g00757 . . . . . Cmo11g00208 . . . . . . . . . . . . . . . . . . . . Lsi06g01414 Csa01g00292 Chy02g02443 Cme02g01831
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006561 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 7 1 1 37