Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0063 ATGAGCTGCTCTTGCAGTCGGCACCGGACTGGCTACGGCGGTTGCGTTTCTTGCGGCAACCGCACGTCGACGATCAGATCAGAGGATATGCCGTACTCGTTGAATACGGAGAATGGACGATTTGGGTCTGGCGCAGTTCTTCAATGTATACCGCGATGGGTCTTCTGCGTGATTTCTACCGCTCTTATGACGTTTTTCGCTTTTGCTGGAGCTTTTGCAGGAGCTATAGCTGGTGCTGTAGCTGGCCGGGCTTCTGATAGTGGTGTCTTTCGTGGGGCCGGATTAGGTGCCATTGCTGGGGCCATACTGACTCTAGAAGTTCTGGAAGCTTCTCGTGCGTACTGGTGTTTGGAACAGTCTGGCTCGAGGAGCGCATCATCAATGGCAGATTTCATAGAGGAGCTTCTTCGTGGGAGGTTTGTGGAAGAACAATTTACTCCAGCAATGCTGACTGCTTACCGTTGGCAGGTTAGCATTGCTAATGTAAGCTATGACGAGATCCGTGATATCTATGGTGGAGTTGCATATAGAGGATTATCGAGTGATTCACTAAAGAAACTGCCGTGTCATGTGATCAAGGATGATATCAAGGCCGGCCAGAGCATCTGTTGTACAATCTGTTTGCAGGATATAGTAAGTGGAGAAACTGTAAGGAGTTTGCCGAGGTGTAGACACAGTTTTCACTTGACGTGTGTTGACAAGTGGCTGATCAGACACGGTTCATGCCCAATATGCCGACAGAGCATGTAG 750 49.47 MSCSCSRHRTGYGGCVSCGNRTSTIRSEDMPYSLNTENGRFGSGAVLQCIPRWVFCVISTALMTFFAFAGAFAGAIAGAVAGRASDSGVFRGAGLGAIAGAILTLEVLEASRAYWCLEQSGSRSASSMADFIEELLRGRFVEEQFTPAMLTAYRWQVSIANVSYDEIRDIYGGVAYRGLSSDSLKKLPCHVIKDDIKAGQSICCTICLQDIVSGETVRSLPRCRHSFHLTCVDKWLIRHGSCPICRQSM 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 390709 393385 + Conep19aG0006700.1 Cone19ag0063 458500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0063 249 SUPERFAMILY RING/U-box 192 248 - -
Cone19ag0063 249 SMART ring_2 204 245 IPR001841 -
Cone19ag0063 249 Pfam Ring finger domain 203 246 IPR001841 -
Cone19ag0063 249 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 45 248 IPR044523 -
Cone19ag0063 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 249 IPR013083 -
Cone19ag0063 249 ProSiteProfiles Zinc finger RING-type profile. 204 246 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0063 Cone-Chr19:390709 Cone9ag1634 Cone-Chr9:11624420 5.86E-33 dispersed
Cone19ag0063 Cone-Chr19:390709 Cone8ag0872 Cone-Chr8:8586233 5.81E-39 transposed
Cone19ag0063 Cone-Chr19:390709 Cone12ag0839 Cone-Chr12:7573641 1.66E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0063 - - - 0.0