Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0067 ATGGCCAAATTCCTCGGAATTCTCTTGGTAGGTTTTCTACTCTCCTTCTGCTCATTTTCTCATGTGAATGGTGAAAGCAATTGGATCGATGCCCATGCTACTTTCTATGGTGGAGGTGATGCCTCTGGAACAATGGGTGGTGCATGTGGATATGGTAACTTATATAGTCAAGGATATGGCACAAACACAGCAGCATTAAGCACCGCAATGTTCAACAACGGCTTAAGTTGTGGATCTTGTTATGAGATAAAGTGCGCGAATGATGCAAAATGGTGTCTTCCTGGCTCTGTAGTGGTCACTGCTACTAACTTCTGCCCGCCAAACAATGCTCTACCTAACAACAATGGCGGCTGGTGCAACCCCCCGCAGCAACATTTCGATCTCGCACAACCCGTTTTCCAGAAAATCGCTCAGTACAAAGCTGGCATCATTCCTGTTTCTTACAGAAGGGTGGCGTGTCAGAAGAAGGGAGGTATCAGATTCACCATCAATGGCCATTCTTACTTCAACCTGGTTTTGATCACAAACGTGGGAGGTGCAGGTGATGTTCATGCAGTTTCGATCAAAGGGTCGAGAACGAATTGGCAATCTATGTCTAGAAACTGGGGGCAAAATTGGCAAAGCAACTCTTACCTGAATGGACAGAGCCTCTCCTTCAAGATTACTACCAGTGATGGCCGCACCATTGTCTCCAACGACGTCGTCCCTGCTGGTTGGTCCTTCGGTCAGACTTTCAGTGGGGTCCAATTTTAA 753 46.88 MAKFLGILLVGFLLSFCSFSHVNGESNWIDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTAMFNNGLSCGSCYEIKCANDAKWCLPGSVVVTATNFCPPNNALPNNNGGWCNPPQQHFDLAQPVFQKIAQYKAGIIPVSYRRVACQKKGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTNWQSMSRNWGQNWQSNSYLNGQSLSFKITTSDGRTIVSNDVVPAGWSFGQTFSGVQF 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 419124 420123 + Conep19aG0007200.1 Cone19ag0067 458504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0067 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Cone19ag0067 250 SUPERFAMILY PHL pollen allergen 155 246 IPR036749 -
Cone19ag0067 250 SMART dpbb_1 63 148 IPR007112 -
Cone19ag0067 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576(InterPro)
Cone19ag0067 250 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576(InterPro)
Cone19ag0067 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Cone19ag0067 250 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576(InterPro)
Cone19ag0067 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576(InterPro)
Cone19ag0067 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576(InterPro)
Cone19ag0067 250 Gene3D - 15 154 IPR036908 -
Cone19ag0067 250 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Cone19ag0067 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664(InterPro)
Cone19ag0067 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664(InterPro)
Cone19ag0067 250 PRINTS Expansin signature 58 72 IPR002963 GO:0009664(InterPro)
Cone19ag0067 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664(InterPro)
Cone19ag0067 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664(InterPro)
Cone19ag0067 250 PRINTS Expansin signature 85 96 IPR002963 GO:0009664(InterPro)
Cone19ag0067 250 PRINTS Expansin signature 97 107 IPR002963 GO:0009664(InterPro)
Cone19ag0067 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664(InterPro)
Cone19ag0067 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664(InterPro)
Cone19ag0067 250 FunFam Expansin 18 154 - -
Cone19ag0067 250 CDD DPBB_EXPA_N 28 153 - -
Cone19ag0067 250 SUPERFAMILY Barwin-like endoglucanases 27 176 IPR036908 -
Cone19ag0067 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Cone19ag0067 250 Gene3D - 156 250 IPR036749 -
Cone19ag0067 250 FunFam Expansin 158 250 - -
Cone19ag0067 250 Pfam Lytic transglycolase 63 148 IPR009009 -
Cone19ag0067 250 PANTHER EXPANSIN-A15 15 250 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0067 Cone-Chr19:419124 Cone1ag1621 Cone-Chr1:57641927 9.72E-144 dispersed
Cone13ag0065 Cone-Chr13:406449 Cone19ag0067 Cone-Chr19:419124 5.97E-183 wgd
Cone13ag0949 Cone-Chr13:8148708 Cone19ag0067 Cone-Chr19:419124 7.32E-148 wgd
Cone19ag0067 Cone-Chr19:419124 Cone19ag0939 Cone-Chr19:7191805 1.37E-152 wgd
Cone19ag0067 Cone-Chr19:419124 Cone6ag0576 Cone-Chr6:2820883 1.51E-155 wgd
Cone19ag0067 Cone-Chr19:419124 Cone9ag0581 Cone-Chr9:2741577 2.15E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0067 - - - 0.0