Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0075 ATGGAAGGAGGTGATGATCTCCTCCACCACCACCGCCGCCCCACCTTCCCTTTCCAATTACTCGAAAAGAAGGATGATCATCGTCATCATCATGACCCTCCTTCCACCTCGTCTACCTCCACTTATCCGTCTTTAGCAATCTCCGCTGAACCACAGGCACCACCACCCTCCACCACCGCCCTCACCACCACTACTGCCACCACACTTGAGACGTCCAAGAAACCCCCTCCAAAACGAACATCCACAAAGGACCGCCACACCAAAGTCGACGGTCGTGGCCGCCGTATCCGGATGCCGGCTCTATGCGCCGCTAGGGTTTTTCAACTTACTCGAGAACTTGGTCACAAGTCGGACGGTGAAACCATCGAGTGGCTACTCCAACAAGCAGAGCCCGCTGTGATCGCCGCCACTGGGACCGGTACGATCCCTGCAAACTTCACATCTCTTAATATATCGTTACGGAGCTCCGGCTCGAGCATGTCCGTTCCGTCTCTTCTCAAATCATGTTCTTACTACAATCCAAACTTCACACTTCAACAAGCACAACAAAGAAGATCAAGTGCTAATAGTACAAGCGCACTTTTGTTTCCGGAAAGTTCTAGTAGTTCTACTACACTTCTTAATTTTCAATCTAGCAACATGGGTTCTCTTCTTAAACAAGAATTATCAGAAGATGAGGATGATAATAATAATAATAATAGTCTAGGGAAGAAGCGAAGGCCGCCGGAAATGGAGTATTTAACGACGTCGTCTTCAGCACAACATCAAATGGGAGGTTACTTGTTGCAGTCTAGTGCGGGGGCGATTCCGGCAAGTCATCATGGAGGTGGTGTGGGTCAAATTCCGGCGAACTTTTGGATGTTGGCTAATGCCAATAATCCTGCGGCCATCATGGGCGGTAGTGGAGGTGGCGGTGGGGGTGGTGGTCATCATGACCCTATATGGACTTTCCCTTCAGTCAATAATAGTGCCTTGTATAGAAGCACTATGTCCAGTGGGTTACATTTCATGAATTTTCCTACCCCTGTTGCTCTATTGGCGGGTCAACAATTAAACGTAAACGATGGTGGCGGCGGCAGTGGCAATAATAGTAATATAAGCGATCATCAAGGTCACTTAAACATATTGGCAGGTCTAAATCAGTATCGATCATTGTCGGAATCTACTGCTGGCGGTTTTCACTCCCGTCATAGTAGTGGTGATGGTGGCGGTGGGGGCGGTGGCAGTTGCAGTGACCGGAATCCGACCAGCAGTCATGACCACTCGTAG 1269 49.33 MEGGDDLLHHHRRPTFPFQLLEKKDDHRHHHDPPSTSSTSTYPSLAISAEPQAPPPSTTALTTTTATTLETSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSLLKSCSYYNPNFTLQQAQQRRSSANSTSALLFPESSSSSTTLLNFQSSNMGSLLKQELSEDEDDNNNNNSLGKKRRPPEMEYLTTSSSAQHQMGGYLLQSSAGAIPASHHGGGVGQIPANFWMLANANNPAAIMGGSGGGGGGGGHHDPIWTFPSVNNSALYRSTMSSGLHFMNFPTPVALLAGQQLNVNDGGGGSGNNSNISDHQGHLNILAGLNQYRSLSESTAGGFHSRHSSGDGGGGGGGSCSDRNPTSSHDHS 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 459768 461381 + Conep19aG0008000.1 Cone19ag0075 458512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0075 422 MobiDBLite consensus disorder prediction 221 244 - -
Cone19ag0075 422 MobiDBLite consensus disorder prediction 221 250 - -
Cone19ag0075 422 MobiDBLite consensus disorder prediction 387 422 - -
Cone19ag0075 422 MobiDBLite consensus disorder prediction 1 34 - -
Cone19ag0075 422 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 51 380 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone19ag0075 422 MobiDBLite consensus disorder prediction 35 75 - -
Cone19ag0075 422 MobiDBLite consensus disorder prediction 1 89 - -
Cone19ag0075 422 ProSiteProfiles TCP domain profile. 82 136 IPR017887 -
Cone19ag0075 422 Pfam TCP family transcription factor 80 199 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0389 Cone-Chr13:3545711 Cone19ag0075 Cone-Chr19:459768 5.01E-38 dispersed
Cone16ag1006 Cone-Chr16:9820009 Cone19ag0075 Cone-Chr19:459768 8.85E-33 dispersed
Cone18ag1441 Cone-Chr18:9703268 Cone19ag0075 Cone-Chr19:459768 1.79E-32 dispersed
Cone19ag0075 Cone-Chr19:459768 Cone19ag0391 Cone-Chr19:3316359 2.60E-39 dispersed
Cone19ag0075 Cone-Chr19:459768 Cone19ag0952 Cone-Chr19:7261477 4.68E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45262 PF13639 zf-RING_2 2.50E-11 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0075 - - - 0.0