Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0084 ATGATGTCGACCCCTGCAAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTACAACAGGATCCACCGGCAGGGATCAGTGGGGCCCCCCAAGACAACAATATAATGCTCTGGAATGCTGTCATATTTGGCCCTGATGACACTCCATGGGATGGAGGAACGTTCAAGTTGACCCTTCAATTTACAGAGGACTATCCCAATAAACCACCAACAGTTAAATTTGTATCTCGAATGTTCCACCCAAATATTTATGCTGATGGGAGTATATGCTTGGATATATTGCAAAATCAGTGGAGTCCCATTTACGATGCAGCAGCTATTCTCACTTCCATCCAGACATGGAAATGA 345 44.06 MMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVKFVSRMFHPNIYADGSICLDILQNQWSPIYDAAAILTSIQTWK 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 492054 494215 - Conep19aG0009000.1 Cone19ag0084 458521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0084 114 SUPERFAMILY UBC-like 2 112 IPR016135 -
Cone19ag0084 114 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 111 IPR050113 GO:0000209(PANTHER)|GO:0006281(PANTHER)|GO:0016574(PANTHER)|GO:0043161(PANTHER)|GO:0061631(PANTHER)
Cone19ag0084 114 SMART ubc_7 8 114 - -
Cone19ag0084 114 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Cone19ag0084 114 Gene3D Ubiquitin Conjugating Enzyme 1 113 IPR016135 -
Cone19ag0084 114 Pfam Ubiquitin-conjugating enzyme 9 111 IPR000608 -
Cone19ag0084 114 CDD UBCc 8 111 IPR000608 -
Cone19ag0084 114 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 114 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0084 K10573 - - mdm:103402923 232.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0084 Cone-Chr19:492054 Cone1ag0953 Cone-Chr1:54775403 4.12E-34 dispersed
Cone13ag0084 Cone-Chr13:521008 Cone19ag0084 Cone-Chr19:492054 3.45E-80 wgd
Cone13ag0975 Cone-Chr13:8299845 Cone19ag0084 Cone-Chr19:492054 5.48E-77 wgd
Cone19ag0084 Cone-Chr19:492054 Cone19ag0965 Cone-Chr19:7339466 3.02E-79 wgd
Cone19ag0084 Cone-Chr19:492054 Cone6ag0608 Cone-Chr6:3008911 1.01E-77 wgd
Cone19ag0084 Cone-Chr19:492054 Cone9ag0612 Cone-Chr9:2902721 1.75E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g519 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0084 Cone19ag0084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71