Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0085 ATGGTACAGGTCAACAAGCTTGAATCTGCAAGAGCTGAAATGGGTGAGGTGAGAGAAGAGAATCAAAGGCTTAAGATGTGTTTGGATCGAGTCATGAAGGATTACCAATCTCTTCAAATGCAATTCCGCAATATTGTTGAACAAGATGTAAAGAAGTCTACTAATGATCGTGATCGAGAAGTTTGTCATGAAGAAACCGAGCTCGTTTCCCTTACTCTCGGAAGATTTCCGAGTGATCGGAAAAGGGAAGAAAATGCGCCCAAGATAATATCTAATACGAATAATCAAGCTGGAAAAGATACTAATAATGATCATCAACAAGTACTATCTCCTAAACAAGACTTGGCTCTTGGACTGGATTGTAAAGTATCTCAAGCATCAAAAAGTTCTCCAAATCAAAGCCCAAGTACTAACAATAGCCTTGATTCAGAAGCAAAGGAAGAAGCTGCTGGAGAAACTTGGCCACCAAGTAAAGTCTTGAAGACAATGAGAAGTAGTGGAGAAGATGCTGAAGTTTATCAACAGAGTACACCCAAGAAAGCTAGGGTTTGTGTGAGAGCTCGATGCGATACTCCGACGATGAACGATGGATGCCAATGGAGAAAATACGGGCAAAAGATCGCGAAAGGAAACCCGTGCCCTAGAGCTTACTATCGTTGCACGGGAGCACCGTCATGTCCGGTTAGAAAACAGGTTCAAAGATGCGCGGATGATATGTCCATCTTAATTACGACCTACGAAGGTACTCACAACCATCCGCTACCTGTTTCGGCAACGAGAATGGCATCCACCACTTCCGCCGCCGCATCCATGCTATTATCTGGTTCCTCAACCTCTCGAGCTGATCAGAACACTGCCGTAGCCACCGGTCTCCAAGGATTGAGTTATTACCTTTCCGATAATTCGAATTCAAGACAATTCTACTTGCCTAATTCTTCCATGGTGTCATCTTCCTCTCCCACACACCCAACAATCACATTAGACCTTACTTCAAACCCATCTTCTTCATCATCTTCATTATCATCTTCTACTCATTTTAACAATTTTTCTTCACCTAATTATTATAACTACCCTCCAAGATATCCCTTCACAAACCTCGACTTTGGTTCTAATCCTCAATCAAACAATATGATGTCTTGGAGCAATGGTCTCATGGGTTATAATAATAGAAACCAAATAGGCACTAGTACCCTACAAAACAGCATTTACCAAAGCTACCTACAAAAGAATAGTAACCCCAATTTTCATCCTCCTCGTCCTCAACAACCTCCACTGGATACTATTGCGGCTGCAACTAAGGCAATCACGGCCGACCCTAGTTTCCAATCAGCTTTAGCTGCTGCCCTGACATCCATCATTGGTAACAGTAGTGGCAGCAGTGGTAGTGGCAGTGCGGTAGTTGGAAGTACTCAAGGTGGTGGAGATGGTTTTGGTCAAAAGAATAAGTTGGGAGAGCCATTTTCACTATCACCATCCACGTACACGAATCAGAGTGCAGCTAAAGGGAATGCTTGTGCATCAAGTTTTTTAAGCAAAGCACCATCTTCAGCAGCGAATTCTCAGTCGGGAAACTTGGTATTTCTTGCCCCGAATAATTCGTTGCCGTTCTCCACATCCAAAAGTTCGTCGGAATCTCCTACCGATAATAGAGACCAAACAAGTTAA 1665 43.0 MVQVNKLESARAEMGEVREENQRLKMCLDRVMKDYQSLQMQFRNIVEQDVKKSTNDRDREVCHEETELVSLTLGRFPSDRKREENAPKIISNTNNQAGKDTNNDHQQVLSPKQDLALGLDCKVSQASKSSPNQSPSTNNSLDSEAKEEAAGETWPPSKVLKTMRSSGEDAEVYQQSTPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRCADDMSILITTYEGTHNHPLPVSATRMASTTSAAASMLLSGSSTSRADQNTAVATGLQGLSYYLSDNSNSRQFYLPNSSMVSSSSPTHPTITLDLTSNPSSSSSSLSSSTHFNNFSSPNYYNYPPRYPFTNLDFGSNPQSNNMMSWSNGLMGYNNRNQIGTSTLQNSIYQSYLQKNSNPNFHPPRPQQPPLDTIAAATKAITADPSFQSALAAALTSIIGNSSGSSGSGSAVVGSTQGGGDGFGQKNKLGEPFSLSPSTYTNQSAAKGNACASSFLSKAPSSAANSQSGNLVFLAPNNSLPFSTSKSSSESPTDNRDQTS 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 498410 500330 - Conep19aG0009100.1 Cone19ag0085 458522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0085 554 SMART WRKY_cls 194 254 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0085 554 MobiDBLite consensus disorder prediction 124 155 - -
Cone19ag0085 554 ProSiteProfiles WRKY domain profile. 189 255 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0085 554 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 457 IPR044810 GO:0003700(InterPro)
Cone19ag0085 554 MobiDBLite consensus disorder prediction 535 554 - -
Cone19ag0085 554 MobiDBLite consensus disorder prediction 457 496 - -
Cone19ag0085 554 Gene3D WRKY domain 179 256 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0085 554 MobiDBLite consensus disorder prediction 73 106 - -
Cone19ag0085 554 Coils Coil 7 27 - -
Cone19ag0085 554 FunFam probable WRKY transcription factor 31 179 256 - -
Cone19ag0085 554 Pfam WRKY DNA -binding domain 195 253 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0085 554 MobiDBLite consensus disorder prediction 88 106 - -
Cone19ag0085 554 MobiDBLite consensus disorder prediction 124 144 - -
Cone19ag0085 554 SUPERFAMILY WRKY DNA-binding domain 187 255 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0085 554 MobiDBLite consensus disorder prediction 319 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0085 Cone-Chr19:498410 Cone3ag1328 Cone-Chr3:32232091 1.06E-48 dispersed
Cone4ag1749 Cone-Chr4:12857921 Cone19ag0085 Cone-Chr19:498410 2.84E-12 dispersed
Cone19ag0085 Cone-Chr19:498410 Cone1ag0014 Cone-Chr1:120101 1.31E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45264 PF00249 Myb_DNA-binding 2.50E-14 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0085 - - - 0.0