Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0088 ATGGTTAGTGCAAGAGAAAAAATGGGTAATCTGTTCTGTTGTATACAAGTGGACCAATCTACAATAGCTATTAGGGAAAGATTTGGAAAATTTGAGGAAATACTCGACCCTGGTTGCCATTGCTTGCCCTGGTTTCTTGGAAGTCAAGTTGCTGGCCACCTGTCTCTTCGTGTGCAACAATTGGATGTCCGTTGTGAGACCAAGACAAAGGATAATGTATTCGTCAATGTGGTTGCATCAATTCAATACCGGGCACTTGCTGACAAGGCAAATGATGCTTTCTACAAATTGAGCAACACAAGGTCCCAAATCCAGGCCTATGTTTTTGATGTAATTAGAGCCTTTGTTCCAAAACTCAATTTGGATGATACATTTGAGCAGAAAAACGATATTGCCAGAGCTGTTGAAGATGAACTTGAGAAGGCTATGTCTGCCTATGGATTTGAAATTGTACAAACACTCATTGTCGATATTGAACCAGATGAGCATGTAAAACGGGCGATGAATGAAATCAATGCCGCTGCAAGAATGAGGGTGGCAGCTAATGAGAAGGCGGAGGCGGAGAAAATATTGCAGATTAAGAGAGCAGAAGGTGAGGCAGAAGCCAAGTATCTAGCCGGTTTGGGTATTGCTAGGCAGAGACAGGCAATTGTGGATGGGCTAAGAGACAGTGTTATGGGTTTTGCGGTTAATGTTCCTGGGACCACTGCAAAGGATGTCATGGACATGGTTCTTGTCACTCAGTATTTTGACACCATGAAAGAGATTGGTGCGAGCTCTAAATCCTCTGCTGTCTTTATCCCTCATGGTCCCGGTGCTGTCCGGGATGTTGCCTCTCAGATTCGAGATGGCCTCCTCCAGGCTAGTTCAAACCAGTAA 879 44.25 MVSAREKMGNLFCCIQVDQSTIAIRERFGKFEEILDPGCHCLPWFLGSQVAGHLSLRVQQLDVRCETKTKDNVFVNVVASIQYRALADKANDAFYKLSNTRSQIQAYVFDVIRAFVPKLNLDDTFEQKNDIARAVEDELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAAARMRVAANEKAEAEKILQIKRAEGEAEAKYLAGLGIARQRQAIVDGLRDSVMGFAVNVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQASSNQ 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 509911 512090 - Conep19aG0009400.1 Cone19ag0088 458525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0088 292 SMART PHB_4 12 172 IPR001107 -
Cone19ag0088 292 CDD SPFH_like_u4 17 285 - -
Cone19ag0088 292 FunFam Hypersensitive-induced response protein 1 48 174 - -
Cone19ag0088 292 Gene3D Band 7 domain 48 174 IPR036013 -
Cone19ag0088 292 SUPERFAMILY Band 7/SPFH domain 52 178 IPR036013 -
Cone19ag0088 292 Coils Coil 164 197 - -
Cone19ag0088 292 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 11 287 IPR050710 -
Cone19ag0088 292 Pfam SPFH domain / Band 7 family 16 189 IPR001107 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0088 Cone-Chr19:509911 Cone2ag0178 Cone-Chr2:936867 1.59E-170 dispersed
Cone15ag0868 Cone-Chr15:6644900 Cone19ag0088 Cone-Chr19:509911 6.43E-117 transposed
Cone16ag0869 Cone-Chr16:9175484 Cone19ag0088 Cone-Chr19:509911 2.47E-29 transposed
Cone19ag0088 Cone-Chr19:509911 Cone19ag0972 Cone-Chr19:7371249 2.39E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g503 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0088 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000975 3 4 3 4 3 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 3 2 3 2 2 2 8 6 2 84