Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0090 ATGGCAGCTGATTCAGAGATTATGGCGGGTGGCAACAATCTCTACGGCGGCGGCAGTGTTTTCCTTCTCAATCAAAGGGGCTATTCTGATAATCACGTGTTCCTTTCTGGGTCGTCCTCTCCTTCTTCTACTCCTCATTCTTTTCTGGGTTCTTCTTCAACATCAATGGTTAGTTTCAAAGACGTCAACGGATCATTATCAAACGGGATGTTTTTCCATCAATTCGACCCCGAAGAAAACATGGACGAAGATTTGGATGAGTATTTCCACCAACCCGAAAAGAAAAGAAGGCTAACTGATGATCAAGTCCAGTTTCTCGAGAAAAGTTTCGAGCTTGAGAACAAGCTCGAGCCGGATAGGAAGACCCAGTTGGCAAAGGACCTAGGATTGCAGCCTCGTCAGGTCGCGATATGGTTTCAGAACAGGCGGGCCCGCTGGAAGACTAAACAGCTCGAAAAGGATTATGAGGTCTTGCAAATAAACTATATTAACCTTAAGGTTGACTATGAGAACTTGCTCAAGGAGAGGGAGAAACTCAAAGCTGAAGTTCTTGGCCTTACAGACAAACTGATTATCCAGGAGAAATTGAAGGAAAAATCATTCGAACAACCCGAAAAGGCACTTGTTGATTCTTCTCCATCAGAGAATGAGATATTCAAATTGGCTTCAAATTCAGGCTCTAAGCAAGAAGACATTAGCTCAGCTAAAAGCGATTTATTCGACTCCGATAGCCCTCACTATACTACTACAACTATCGATGGAGTTAACGACTCTTCTTTCTTCGAAGCTGATCAATCTGATCTTTCACAAGATGAAGAAGAGAACTTCAACAAGAGTTCTTTACCTATTTACTTCCTCCCGAAGATTGATGATGTGGGTTACTCCGACCCGTGTGATAATATCGGATTCTTGGATGAAGACAATAACGCCATTTGGTCTTGGTCTTACTGA 951 42.9 MAADSEIMAGGNNLYGGGSVFLLNQRGYSDNHVFLSGSSSPSSTPHSFLGSSSTSMVSFKDVNGSLSNGMFFHQFDPEENMDEDLDEYFHQPEKKRRLTDDQVQFLEKSFELENKLEPDRKTQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEVLQINYINLKVDYENLLKEREKLKAEVLGLTDKLIIQEKLKEKSFEQPEKALVDSSPSENEIFKLASNSGSKQEDISSAKSDLFDSDSPHYTTTTIDGVNDSSFFEADQSDLSQDEEENFNKSSLPIYFLPKIDDVGYSDPCDNIGFLDEDNNAIWSWSY 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 519877 521883 + Conep19aG0009600.1 Cone19ag0090 458527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0090 316 Gene3D - 88 155 - -
Cone19ag0090 316 FunFam Homeobox-leucine zipper protein HAT5 87 151 - -
Cone19ag0090 316 Coils Coil 155 189 - -
Cone19ag0090 316 CDD homeodomain 94 150 IPR001356 GO:0003677(InterPro)
Cone19ag0090 316 SMART HOX_1 92 153 IPR001356 GO:0003677(InterPro)
Cone19ag0090 316 Pfam Homeodomain 94 147 IPR001356 GO:0003677(InterPro)
Cone19ag0090 316 SUPERFAMILY Homeodomain-like 76 151 IPR009057 -
Cone19ag0090 316 Pfam Homeobox associated leucine zipper 149 190 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag0090 316 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 82 263 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone19ag0090 316 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone19ag0090 316 PRINTS Lambda-repressor HTH signature 120 129 IPR000047 GO:0003677(InterPro)
Cone19ag0090 316 PRINTS Lambda-repressor HTH signature 129 145 IPR000047 GO:0003677(InterPro)
Cone19ag0090 316 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0090 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0969 Cone-Chr13:8272664 Cone19ag0090 Cone-Chr19:519877 2.13E-28 dispersed
Cone15ag1040 Cone-Chr15:8623588 Cone19ag0090 Cone-Chr19:519877 2.07E-15 dispersed
Cone16ag0859 Cone-Chr16:9133183 Cone19ag0090 Cone-Chr19:519877 1.06E-28 dispersed
Cone16ag0919 Cone-Chr16:9435684 Cone19ag0090 Cone-Chr19:519877 2.29E-33 dispersed
Cone19ag0090 Cone-Chr19:519877 Cone2ag0135 Cone-Chr2:717434 1.41E-35 dispersed
Cone16ag0147 Cone-Chr16:853202 Cone19ag0090 Cone-Chr19:519877 1.01E-67 wgd
Cone19ag0090 Cone-Chr19:519877 Cone2ag0185 Cone-Chr2:961623 7.10E-26 wgd
Cone19ag0090 Cone-Chr19:519877 Cone6ag0614 Cone-Chr6:3041427 4.06E-54 wgd
Cone19ag0090 Cone-Chr19:519877 Cone9ag0617 Cone-Chr9:2933324 1.76E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45265 PF00956 NAP 4.10E-25 No_clan Cone TF